RNA id: TU231490


Basic Information

Item Value
RNA id TU231490
length 1546
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G156313
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10112617 ~ 10116955 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTgtttagaacattttatttattctttttttgacaCAAATGGTTCTATAAATGTATCAAATTTGGCATATCAGTAATTGTTTGTCCTGTAACCCAAAGGAATGTCACTGCAGTAAAgattaagtttaaaataatgtctAAAGTATAAATCAGAGACTTAACAGGAGACCAATCTACTGGATTAGTCACAGAAGCACAGACGTCATAGATATTTCATTCTCAAAGAAAATGAGTACTGTCAACTTACACAGCAAGGGGGAAAATAATTGGcatttatataatagttttaaaaacacCTGAAAGCCTCTAAGAGCTTTAGGTGATGTGATGTGCTGCTATGGATGAAGCGTCGTCACTAGATGTGATCACATGACCTCATAGCCGCTGCGGATGGCTCGCATCAGAATGCAGGACAACACAACGCCCGtgatctacTGCACAAATGCAATGACCAGAGCTGCCACAGCGATCCACAGGATGTTTTGCTTTAGAAATGTTTCCACAATTGGCTGACATCCCTGtgttaaacaaacacaatatcAAAACCTAAGTGTGTATAGTGCAGCCCACATATTCTGTCCAATAAATTTAAACAGACTATATGTGATTTTTAGCTGTGAGGGCATTCTTTGTAAAAATGCCAAGTTACAGAAGAGACTgcactttcagaaaaaaaaaggagtctTACCTCTGTGTAGATTTTGTTGGCATCGTGGATAGCTTGATTACCACAATTCACGGTGATATTTTTACAGCAGGTGTCTGGGACTGAATTGCGAGGGAAGAATTTTTCTGTATGGTGTCAATAGCTTCACGGTTTTCCGTTTCGTTGTATCCTGCGATCATGGTGTCAAAGCCTTTATTCAGCAGATTAGGCAGCTGCAAAGAAAGAGATTATTAGCCAAATGGTACTaggaaacagatttttaaaaattaagtgcCAATGAGAAGAGTGCTTACGTTCCCACGCAAGACATATACAGCAATGGCAGCTCCGATTtcaatgatgatgatgagggaGAGAATAACAGCAAACTAGGAGAGAATAAATAAAGGAGAAGTGACTGATAAAAGGTGATAgaatatcatttcatttttaatgattgtaTTGAGAGGTTTTTTTGTAGGCATATTATGAGGCACCATTTCCATTGTAACAgtttgattttcatttcagtaaatTATGCAGATACACATGTATTCTTTAATTTTAAgtgttgcataaaaatgaatcTGGTTTGACCGGTTCGCCATGTGTTGACCATGTCAACAAAAACATGCTTgcgaaatataaacaaaaccatCAGCAGAAAGTTAGTGGAAATATAGCCAGATGAAGAGTAATAGTGTAAATGTGTACCAAGTTACATGGACAATATTTATCCACTTAGGACCCTGCGGCCTCATATAAGagcattatattttagtaaatttaaGTTGAAATATTACTTTCTTTTGCTAAACaggatattttatacatatgagggactaaaagcatgtttattacacattttgggAGACATAAATGAATGGGAatgaaattattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231439 lncRNA downstream 54794 10058011 ~ 10059303 (-) True G156283
TU231431 lncRNA downstream 60548 10052526 ~ 10053549 (-) True G156278
TU231407 lncRNA downstream 96676 10016456 ~ 10017421 (-) True G156264
TU231404 lncRNA downstream 162066 9951143 ~ 9952031 (-) True G156261
XR_006247820.1 lncRNA downstream 236929 9867920 ~ 9877168 (-) True LOC122328702
TU231500 lncRNA upstream 101534 10218489 ~ 10385967 (-) False ankrd52a
XR_006247790.1 lncRNA upstream 174510 10291465 ~ 10294043 (-) True LOC122328389
TU231535 lncRNA upstream 231186 10348141 ~ 10351881 (-) True G156341
TU231551 lncRNA upstream 238999 10355954 ~ 10357617 (-) False LOC122329224
TU231559 lncRNA upstream 269999 10386954 ~ 10387496 (-) False G156364
XM_043224546.1 mRNA downstream 51099 10059991 ~ 10062998 (-) True ormdl2
XM_043224473.1 mRNA downstream 64183 10041448 ~ 10049914 (-) False nlrp12l
XM_043224529.1 mRNA upstream 109 10117064 ~ 10121368 (-) True letmd1
XM_043224528.1 mRNA upstream 109 10117064 ~ 10121364 (-) False letmd1
XM_043224530.1 mRNA upstream 1047 10118002 ~ 10121366 (-) False letmd1
XM_043224550.1 mRNA upstream 14051 10131006 ~ 10132159 (-) True rprm3
XM_043224513.1 mRNA upstream 23195 10140150 ~ 10145452 (-) True nr4a1
TU231376 other downstream 280415 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 280464 9832128 ~ 9833633 (-) False zgc:153284
TU231374 other downstream 305728 9801785 ~ 9808369 (-) True hmgn3
TU231373 other downstream 305865 9801785 ~ 9808232 (-) False hmgn3
XR_006247818.1 other downstream 904133 9196227 ~ 9209964 (-) False ccdc187
TU231501 other upstream 113591 10230546 ~ 10231919 (-) False ankrd52a
TU231517 other upstream 120141 10237096 ~ 10239273 (-) False ankrd52a
TU231532 other upstream 248588 10365543 ~ 10367369 (-) False LOC122328779
TU231697 other upstream 558729 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 983789 11100744 ~ 11105223 (-) True G156746

Expression Profile