RNA id: TU231625


Basic Information

Item Value
RNA id TU231625
length 3518
RNA type TUCP
GC content 0.45
exon number 2
gene id G156399
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10563344 ~ 10572246 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTACTCTTCCTCGGTTCAGTTTGCTCTACAGCCTGTTTTTCCATCTCTGTCACCGTCGCCTTGTACAATATTTTCTCTGTTAAAGCAGCCAAGAATAATTGTGTAAGATTTGAAAAAGAGGAGGAGGCggtgGAGGTAGACAGAAAGGCAGCGGCATGATTTCAAGGGACAGAAGAGAAAACAGTATGTGAGACACAAATTACTACAACAGTGATCATCCGTCTGATTATCTGGTACACTGTTGACTGGCAAATCAATCCAGCTGTCACATTTACACAAAGCATAAATATTCACATGAATTTATGAATTGGTGTTGATTTTTGAAATGGTGGTATTGGTGAAATCTTAACCCTGAACCACAAATCCACATGTATGCATTGACCTttggacagacagaaataatCATAATCACAATCAAGTATACTTCAAGTAATTGCTTATAAAGTGAATTATAGTGCAATCGACATGTCATTAAATGCCACCCGTCACCTgtcagtcaaataaataaacatcatagGGTACATAAAGTCATTGCCAAATGTTTGGAAAAAGCTGAAAGCAGAAGATTCTAACTGAATTTTGTTTCTGCATGcagtaaatatgtaatttattttcactgttttaaatTTCAAGCTTAGATAGTTCATCAATTTGTATATTCCACTTTTTTAACCAAGTAACagaatgcaaaattaattttttagtGGAATTACATTGCATGGTATTTCAGAAATAACACAATAACTAACATTGAATAACATTAGTACTTATAGTTTTGTTTAGCAGGGTGTAATACTAAATTAAGTTCAGCTGTTTTCTTATTCAGGCTGTAATTATTTAACCTAGACTAACATGAAAATTAGACCTATTAGAATTTCATCGAAAACATCTGGCTATGACAGTGTTTTTAATGGTCACACAGTGAAAAATCACACAgtgaaacaaaatcaaaaaattaatttgtggtGAAAAAGCTTCCGTGACCCTATTAAAGTCATTTAACCCTGATCATTGTCTAAGCGCTGAATCTTTCTTACTGTtcatattattacttaaaatgcattacccACAATTTAGCATCCAACTATACAGAGCATGTCTGAACCATCAAACTTTCCCACATAATTGAGCAAGAATAAAGAATACATTATCTAAAAGACTCCAGATGGGCTAAGTATCATCATGTGACAGCATTTATCTAGGACACTAGTGGTATATGCAAAGCATATAAATAGCTCAGCAGGCGCTTGTCCAGCTCCTTAAGAGGAAAAGATGACTGTTCTGCTCTTACGCCACACAGGCATAAGTAATGGGACAGCTAACTACTGCACTCACGGCTACAACAATGATGGCCATTAGTAATCCAGGTACTTTGGCGGCACTGTACATTAACACATCACAACACTCGCTCAGATaaatcaatacacacacatacgacGCACACCCTCTGCGTTGACAGTAAGAGGGACGCACAAAAGGACAGCTTCTTCCCTTCACTTATTGCGTCTCTCCACTCTAAATAAGGGTAATACAATCATATTAAAGGGGATCTTTTAGTGTCACTCACAAAGCTGAGTTAATGTCATTGTGTCAGTCCTTCATTCATAACACATCTTCTCGCCTCTTTATTCAGGGTAGTAGTTGTGGAAAAAGGTGAAAGCTCGTTTGAAGTCCTGAACTTCACAAGCATCTCATTCGTAGGTGTAAATACATGCTAGTGATTCCCCTTCCTCATTCTTATCCAGGATACAGACCATAGAGAACCACAGCGTTAAGGTGCTGTGCTCAGACACCATTTTTCCTCTGGTTGCCtcaattatttttacatgtgttAACCGCTTTCTAATTGGACATCTGACAGAAGAACAGTGATATCACTGGCTTTAAGGCTTCTCCAGGAAGAAGAGCTGGTCTCATATACTCATTCCCCCCGGACCACCTCCTCCTGCGGGGTAGTGCCGAATACCTCCTCCTCGACGCAGGGAATGGAGGGCCACCGTGCAGCAACCCCGCAAGAGAGAACCAATATGGTACATTGGCTGACCAACACGGTGTGGACCCCGACAGAGCCAAGCTACTGTGGGGACCACTGGCACGACCACCGCAAGCAAATCCACTAGGAAGTGCCGGCTCCAGTAGTTCTTTGCTGGTAAACCACAGCCAGATGACTTGGACTCTGTGTTCGTCGCACTCTCATCAACCTCATCTTCATCGTCTGTGCCTATATTAATGACATGATCCCCTTCAACCCCAGCCTCTGTTAGTACACTAAGAGGCTGAGTGGTCTGTGGAAGGGGCTCTCCTTCAATGCCAAACAATGGCTCTATGGAGCAAGGTGAGGTGCCAGGGTTTGGCAAAGGGTCTGTCACAGGTTGAGATTGTACTTGGGACCCCATGGTGTCTGTGGTCAAAGCTGTTGTGGTGATTGGTAAGACTGTAAGGATCTCGGAAACAGTTGTCTCCTTGACAGAAGACTCCAACACTAAAGTCGCAGGTCCTTTTGATGCCCAAGGCTCCATTGCAATAGCTGGTGCAGACTTAGTGGAAAAGTCTGTTACGACAGAAACTGTGGCAACTGTTGCCGTAATGGCTGACTCTGTGGCTACCGACTCCAGATCATCTCCCTCATCGGACATCCAGGTAGAGGTCGGACTGCATGCCTGGGAGCGGAAGGTACGCTCAGCAATAGTGTCCAGATCGGAGTTAAAGGACGTACTGGGACCATGAGCAGGTGCCGAAGCAGGGGCATGGTCGTAGTCGGTTTGAATGCCTTGCTCACGCAGGTGATGTAGATATAGGTGATGATGCGACAGACATGGATGACTTACACTGACAGTTGTCCCTGTCCCGATCCCACTGCAGCGGAGTGGCACAACTCTCGGCTCGCTGATGCTCAGTGCTTCATAGGTGGAGGAGTGTGGCAGGCGGGAGTACGCATTAAGCAGCGAGGCCGTCTCTTGAGACAAAAACGCAGCCTCCAGGAGCAGGTCTGCTTTGCTTGCTCCTCTTCCACTTTCTCCACAGCAAACAAACCCGCTGTCCTGCGTGCCCTCACCTGACAAACATGGAATGTCACACCCATTTTCATTACTGCCACGTTCCTGGCCAGTCTGGTCACTTAGCTTGGTGTAGGTAGAGCTGCGGGTAAGCGAGCGAGCTGGGGAGCCTTCAGAAGACTCCACCAGGCCCTCGCTGACCTCCAGCTCTGCCCCCACCACCCCTCCACCTGCCAGGGTTTCGCCTGTTTTGGGGGTCCCGACCTGAGCCAGCTCCATGCTTTGCAATAAAGACTCCAGCTTGTGGTTCTGGAGGTTTATGTCTTGGAAGCACTTTTGCACTCCAGTGTCGGTGTCTCCCAGACTAGATCTGACGACATCGACCACCTGCTTAAGCTGCTGGATCTCCCTGCGAGCCTCCTTCAGAGCCAACTGGGCCTCCACACGGTGGCACTCCTCTTCTATCCAATCCTCTTGCATACGAGACAGCTGAGTACGCAACTCATCAATCTCAGTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231605 lncRNA upstream 42577 10520142 ~ 10520767 (+) True G156387
TU231594 lncRNA upstream 44593 10514992 ~ 10518751 (+) True LOC122328447
TU231277 lncRNA upstream 174718 10387868 ~ 10388626 (+) True G156171
TU231275 lncRNA upstream 175844 10386960 ~ 10387500 (+) True G156169
TU231344 lncRNA upstream 228119 10329851 ~ 10335225 (+) False LOC122328781
TU231628 lncRNA downstream 968 10573214 ~ 10655710 (+) True G156401
TU231624 lncRNA downstream 94615 10666861 ~ 10674148 (+) True G156398
TU231640 lncRNA downstream 124056 10696302 ~ 10696558 (+) True G156413
TU231643 lncRNA downstream 126552 10698798 ~ 10700895 (+) True G156414
TU231646 lncRNA downstream 130483 10702729 ~ 10703093 (+) True G156417
XM_043225266.1 mRNA upstream 9332 10551104 ~ 10554012 (+) False LOC122329061
XM_043224138.1 mRNA upstream 46201 10514979 ~ 10517143 (+) False LOC122328447
XM_043224139.1 mRNA upstream 46201 10514985 ~ 10517143 (+) False LOC122328447
XM_043224137.1 mRNA upstream 46201 10514985 ~ 10517143 (+) False LOC122328447
XM_043225421.1 mRNA upstream 114013 10447808 ~ 10449331 (+) False LOC122329231
XM_043224311.1 mRNA downstream 74717 10646963 ~ 10658747 (+) True LOC122328564
XM_043223977.1 mRNA downstream 193616 10765862 ~ 10772199 (+) True commd7
XM_043225170.1 mRNA downstream 214638 10786884 ~ 10870751 (+) True nol4lb
XM_043225171.1 mRNA downstream 214638 10786884 ~ 10870751 (+) False nol4lb
XM_043225173.1 mRNA downstream 302578 10874824 ~ 10884303 (+) True srms
TU231621 other upstream 8624 10551097 ~ 10554720 (+) True LOC122329061
TU231564 other upstream 145446 10415671 ~ 10417898 (+) False LOC122328383
XR_006247902.1 other upstream 727865 9835395 ~ 9835479 (+) True LOC122329332
XR_006247904.1 other upstream 728174 9835096 ~ 9835170 (+) True LOC122329334
TU231144 other upstream 793724 9724218 ~ 9769620 (+) False G156081
TU231641 other downstream 126681 10698927 ~ 10700895 (+) False G156414
unassigned_transcript_2617 other downstream 329823 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231770 other downstream 341658 10913904 ~ 10923988 (+) True G156497
XR_006247906.1 other downstream 502845 11075091 ~ 11075166 (+) True LOC122329336
XR_006247905.1 other downstream 503416 11075662 ~ 11075737 (+) True LOC122329335

Expression Profile