RNA id: TU231700



Basic Information


Item Value
RNA id TU231700
length 938
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G156459
representative False

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10667957 ~ 10675579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tttaaaacaaaatatgtcagTACTGAATTTATTTGTAGTTTGAACAGGCTCGCTGGTTTTAATTAgacaaaaaagaagcaaaatcTTGTGCCTCCTTGTGTGTTAGACATCTGCCAGAATACCGCTGGTTTTGTATATCTGCAAAGTGACCATATCAACTGAAAAAGTGCCATCACATTACCTGAAATAAAACTTTACTATAGACCGGTCTGATTAATACAAGTAATGAAGTATgctttttctgtcattttggtgagcagcatttttatatataggttttgtttatttttttgctgtattttattaacACGCAGCTATTTGGAAATGCTTTCAGCGTGTTCCCTCTCTTCTGTGTTTGATGAGGTTCTGTAGTGGAGTAAGCGGCACGTTTGGCACCGCAGCAATAGATGCATGCCATTCTTAGTGCTTAAGGATTTTGTGATCATGTTCATTGTCTCATTGAATCTCAGAATCAACCAATAACCTGCTAATTAATATCTGTAATTGATGGGCACTTTCTGTCCTCATGGAAATGAAAGACTATGTTTAACTGAAAGACAAAGAtgtctggaaaaaaataagGGGTTGTGACCTACACTACATATCGTGACATACACTAATTGCCGTTCTGATGCTAAATTATTTTCAGCTATTCATGGACGTTAATGTAGGTTGCGCCGCCTAGACAATTGATGTGAATATATCGGATGCGGATACAGTGACAGTGCTCTTTTGTATTGACatggaaatcatttttaatttaatagaaGTCTGTAGACGCTTAAATACTTGAGTGGATGCTGGCGATGTCTGTGATTCTAAGTCAAGCATCAAATATATggctttaatatttctgtaatgcactgtatatttatgtactGTCTTAAAGACAATAAAACGATTCAAATAATTCTACAAAaaaaaaaaaaaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU231691 lncRNA downstream 125070 10540899 ~ 10542887 (-) True G156452
TU231560 lncRNA downstream 279342 10387873 ~ 10388615 (-) True G156364
TU231562 lncRNA downstream 280267 10386954 ~ 10387690 (-) False G156364
TU231559 lncRNA downstream 280461 10386954 ~ 10387496 (-) False G156364
TU231551 lncRNA downstream 310340 10355954 ~ 10357617 (-) False LOC122329224
TU231718 lncRNA upstream 20873 10696452 ~ 10696677 (-) True G156468
TU231719 lncRNA upstream 23018 10698597 ~ 10700224 (-) True G156469
TU231724 lncRNA upstream 27017 10702596 ~ 10702821 (-) True G156471
TU231736 lncRNA upstream 52385 10727964 ~ 10728248 (-) True G156478
XR_006247879.1 lncRNA upstream 205012 10880591 ~ 10882652 (-) True LOC122329022
XM_043224620.1 mRNA downstream 85527 10568565 ~ 10582430 (-) False LOC122328736
XM_043224621.1 mRNA downstream 85528 10568565 ~ 10582429 (-) False LOC122328736
XM_043224619.1 mRNA downstream 90564 10568565 ~ 10577393 (-) True LOC122328736
XM_043224136.1 mRNA downstream 142585 10522098 ~ 10525372 (-) True LOC122328446
XM_043224135.1 mRNA downstream 146885 10516716 ~ 10521072 (-) False LOC122328445
XM_043224764.1 mRNA upstream 101 10675680 ~ 10678150 (-) True LOC122328798
XM_043224763.1 mRNA upstream 3426 10679005 ~ 10686715 (-) True LOC122328797
XM_043224762.1 mRNA upstream 14085 10689664 ~ 10694950 (-) True LOC122328796
XM_043225474.1 mRNA upstream 30404 10705983 ~ 10709169 (-) True cdc42l2
XM_043224777.1 mRNA upstream 33767 10709346 ~ 10727516 (-) False dnmt3bb.2
TU231532 other downstream 300588 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 428684 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 436038 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 834275 9832128 ~ 9833682 (-) False zgc:153284
TU231375 other downstream 834324 9832128 ~ 9833633 (-) False zgc:153284
TU231697 other upstream 105 10675684 ~ 10678049 (-) False LOC122328798
TU232124 other upstream 425165 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 842431 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 1065821 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 1065821 11741400 ~ 11746620 (-) True LOC122328546

Expression Profile