RNA id: TU231764


Basic Information

Item Value
RNA id TU231764
length 3098
lncRNA type inter_gene
GC content 0.39
exon number 6
gene id G156496
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10829167 ~ 10901823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCTGTCTCATCTGTGCTTGGATATGCATTACAGTCCCAGTCTTTCCCTTCTTCACGAGATTTGAGCATTTTTCTGGAACATTTACGTTGGACTTTAAGGATTTTTACACATGACAGACAGCCTACAAAAAGGTTCCAAAGAACATCCCACTTTCCAAGCATTTGGTTCTGTCATATTTACGGGTAAAAGCTGACCATGACCACCGTAAATGCCCCCGTGTGTCTCCTTGCTCGGAATGAGTTTTATCGGAGCATCTGGCCGACAGACAAAATGAAGGCAGTCAATAGTCTTTCTGATAACTTAATGGAACCAAAGCAAAGACAAGTGACTGTCTGGGTGACCAAATCTAAGCACCAAGGTTTAGGGCCTATGAGTGATGGCTGGATGATAAATGTGGTTTTAAAGAGCCCAGGATCCAGCCGAACCTCTTCTAAACGGCAAAGTCCTGCTGATCGTGTGGTGAAGTAGATACTACACAAGAACAGCACATAAAGCGCTAGAAAAATGCTTCTTTTCAGACACAATGTGATGTTAATGTGATGCTTACAAGTTTATCGGAAACCGCTCTGATGTTAAGTCTCTTTATGTTCAccaagaatgcatttatttgatcataaaaacaataacactgtaaaatattattacaatttaacagaAGCGTAAGGCctatttctatttgaatatattttcagatgtaacttaattttcagcatcattactccagttctTGGTGTCACATgttctttcagaaatcactctaatacgctgatttgctgctcaagtaacatttattatcagtgttgaaaatagctgtgctgcttattttGTGGACACtgctattaattgttttttttgatcaatttatatTAGACACTTAAGCTTAAAAGAGAAGCATttgcaaatgttatttgttttgtaactttataaatCAGTCATACGTgcctttttgaataaaaacattaatttagaaaaataaaaaatgtggaaaattcTTACCAACCCTAAATTTTGATCagtactgtaattatattgcataaatatCTATATCCTTATTCTGCCTCACTTTACACAATTTTTAAGAgagccatctttttttttttttttttttttttttttTATTGGGCTGTTTAAGACCATTTATtgtgctgaaaaacacagaataagacaagtaacaaaaacatttccatcAGCGTTACAgatgtgtaaaaatgtacaaaatcttTTTGCAAGTTTCAGCTCTTCCATTTATTACGTGATATATAAAACAATggatacaaaaaacaaaacaaaaaagaaatactaaAACAGCCCATTATATGGATGGGaaattaatacagaaaaaaaaaggggagCCAATTCCGTCCCCTAGCGTTGGTGTCCTGATCCGGTGTCTGATTCAGGAATGAGGAGAACTCCCCGCCTCCGACTTGCCTCCATCGCTACTTTCACTCGCTTGCCTCATCACCATCTCCCGGGCAATACATGTCACCTGCCCATTGGTCACACTCACCACACCTGACCTGCAGAGAGCCAATCAGATTAAGggatttagaatttaaaaactgATGTCAAACTAGCACCCCTTGTCATGAAATCTGCAATTAAATGTGCATCAGCACTTGGCAAGGCCTTCGTGTTACATGCACCAGCTTGGGAGAAACTCAATCCAGTGACTCACTTCTGCTGAGCTTCCTCAGTAAGAGTTCCCATACCAGGCTGGTTCTGCTTCCCAAAGAAGAAACTGGACCACCAATGCCCAGAATCCTGTTTGGGCAGACCTAAAGCATAATTAAACAGGTCAGAATGAGCAACGCGCCGCCTGCCTAATCTTCTAATGGATTTAGGGCACAATGAGGTAGACACTAACGCAAATTGCAGGTAAAAagtctttaaacaaaaagacatgCAAGCTGATGGACGCACGCAAGCATGAGTCGTTTTTGTAACTGACAAATTCCTCAACAGCTGATTATTCAGAAGCAATCAGACGAGTGTTCAGTTGCGATATGGGTACAAACTTCATTGCATAACGAGCAAATGTCTTCATGTCATGTCAAGATGTTGCAATGAAGTATTGATTGAAGTGGGGGGCTGAAACGAgagtgaaatgaaatgtaactCACCTGGGTGATGTGGAATGACCTCCCCACTGTACTCTGAACTGCCACACGAGCTGCTACTGGATGTAGAGCCAATGcgccctgaaaaaaaaaaaaaagtcttataaaGGGAAATTCTCTATTGCTATAGGAGTAAAGCACTGGCAAAGGCAACTTACTTCTGTAGTAGTCGTGAGTAGCAACCAGTGAACCACTAGATGGGATGGCTGCCATTTTACAGACTTGTGTAAATAGTGACTTAGATGGAAACCCTGTGAAGAGATTGAGAAGACATTTAATGCCGAGAGAGAATTTGATGTAAATAACACAACCTAGTTAATAGCTTCTCATCTTAAAATGGATTTTCGTTAATAGAGATAGATTCAGGAAAGGCATTTGAGAGCTTTTATCTCTCACGTGTAGTTTGAAACCTTGTATTGCTTACATATTGGTCTTGTAGCCATTTCTCGTTGTTACACGATTTAATGCCAAACCACAAGATTAATCGAACTGACATTATGCCGTATGAGACATCCATTACAAacactgtgtttttaatcaaacgGCAAGTAACACGAGGAAGTTACAGTAATCCCGTAGGAATTACAGCAGTTGAGATCACAAAGGAAACGTTTTTTACTCAAATGCACACGTGTAATGAAAACATACCCCACTACAGCAAAACACACGATACTAATCGAGGTAACGCTCAGATTCTCTGACCCAAACAATGAGTAACGTTTCCCTTTAAAACTGTGAAGACCACCATCTCACCTCCTTTTGCAGCTCTTGCTGATGGTATTAGAGCACTCTTCTCAATTCAGTCGGAGGCTTTGGGGAGAAAACGCTAGGCGACGGAGCCCATTTGAAAAGGTTGGGATGGATAAGACCCTCCACGTCCTGAAATATCTACCGCAGTGCTGTCTAACAAAAACAACTCGTTTTCCTGCATTTATACAGAGACGAGACGTCGACGACCAGCCGTGATGAAGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231666 lncRNA upstream 166878 10727933 ~ 10728230 (+) True G156432
TU231665 lncRNA upstream 167944 10726918 ~ 10727164 (+) True G156431
TU231646 lncRNA upstream 192015 10702729 ~ 10703093 (+) True G156417
TU231643 lncRNA upstream 194213 10698798 ~ 10700895 (+) True G156414
TU231640 lncRNA upstream 198550 10696302 ~ 10696558 (+) True G156413
TU231773 lncRNA downstream 12081 10913904 ~ 10920405 (+) False G156497
TU231851 lncRNA downstream 131968 11033791 ~ 11035495 (+) True G156551
TU231865 lncRNA downstream 175539 11077362 ~ 11078675 (+) False LOC122328437
TU231864 lncRNA downstream 181965 11083788 ~ 11085604 (+) False LOC122328437
TU231887 lncRNA downstream 222269 11124092 ~ 11126634 (+) True G156572
XM_043225172.1 mRNA upstream 2563 10884466 ~ 10892545 (+) True ptk6b
XM_043225173.1 mRNA upstream 10805 10874824 ~ 10884303 (+) True srms
XM_043225170.1 mRNA upstream 24357 10786884 ~ 10870751 (+) True nol4lb
XM_043225171.1 mRNA upstream 24357 10786884 ~ 10870751 (+) False nol4lb
XM_043223977.1 mRNA upstream 122909 10765862 ~ 10772199 (+) True commd7
XM_043224407.1 mRNA downstream 33140 10934963 ~ 10938573 (+) True gid8b
XM_043224408.1 mRNA downstream 33247 10935070 ~ 10938573 (+) False gid8b
XM_043224390.1 mRNA downstream 37572 10939395 ~ 10948900 (+) True slc17a9b
XM_043225380.1 mRNA downstream 139257 11041080 ~ 11049656 (+) True rnd1a
XM_043224234.1 mRNA downstream 156336 11058159 ~ 11062247 (+) True prim1
TU231641 other upstream 194213 10698927 ~ 10700895 (+) False G156414
TU231625 other upstream 322862 10563344 ~ 10572246 (+) True G156399
TU231621 other upstream 340388 10551097 ~ 10554720 (+) True LOC122329061
TU231564 other upstream 477210 10415671 ~ 10417898 (+) False LOC122328383
XR_006247902.1 other upstream 1059629 9835395 ~ 9835479 (+) True LOC122329332
unassigned_transcript_2617 other downstream 246 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231770 other downstream 12081 10913904 ~ 10923988 (+) True G156497
XR_006247906.1 other downstream 173268 11075091 ~ 11075166 (+) True LOC122329336
XR_006247905.1 other downstream 173839 11075662 ~ 11075737 (+) True LOC122329335
TU231904 other downstream 272598 11174421 ~ 11177033 (+) True G156586

Expression Profile