RNA id: TU231773


Basic Information

Item Value
RNA id TU231773
length 2294
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G156497
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10913904 ~ 10923988 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAACCTAAACACGGTTGTTTCGATCCGGTGTTTTGTGtcggtttgttttgtttttgtttaccttGATTGGCGGAATCCATGTCGTCGTTTGAAATCTTCAAAACGTTGTCTTGACAGTTACGTAATTCGGAGGGGAAAAGCTCTGCGAGGCGTAAATGCGTGTCTCCTCTACTACCAAAACATCCAAAAGCGCTTGACAAGCCAACACAAGATCCCGAGCGATCAGCCAACTCAGCTTGAAGAGCTGCCCAAGTACGCTTTCCTTCCGGCGCACGGAGATGACGTCCACTGCGTCCCGACAAAATACCGCTGGCCCggattgttttttctttttatggaaATCTAGCAGGTCGGTGCTGAAGTGCTTAAGAAAGCATGTCATTTACAGTGAACAAACTGAATTATTAGAAACGCACAAGCAGTTTACTACAAAATGGATAAACTATAGTTGGCGTTGAGAAACCAGTGTTCATTTGTGGCTACCAAGGTTTAACTAAACTCGttttataaagtaaaaccaCGATTCAGTTTTCGTTAGTTTGTGACAAGCAGACTTCGATTTATTCATCAAGACCTATACGATGATATCAATTATTTCTGTTTAACAATGGCGAGTGGcgacttattttttttaattgacgtggcttgctcttttgtttttactatattaatattaatatttttggcaAATGTAAAAGCCCTTTCACACCAACATTTCAATGAATAAGCCTCAGGCTAAAGAGAAAGTAAATGTTTATCTAGTCAGTTTTgcttattagttattttttgcttattaggGTACAGTTGAATTGGATCATTGAAGGTCAGCagcaattaaatacataaaggaTCTAtgtgttatttaacatttaaatattgcagGTTTGTGCCATATtgcatttttcagattttattcatGTTGAGCATTTATTCTCAAACTACAGTAACATCTTGGGAACGGAAGACCTGTCAAacaataaatgggaaaaaagtAACTTAGATGAATTTATATGAATgtgttactttactagttatttttttaaaaggtaatcTGATTACATTACTCAAATGTCAAATCATTCCAGACGGACAAAATCCTGTCTTACATTTTACTCATTTGAGTAGCAATTTCACTGAGATATACATTAcgtttagaaagaaaaaactttaCTTTCATGTCAACtttcaattaaatgttaatCATACAGAGAGCCCCAGGGATTACACgtggaagaaaaaataaatattgtgccACAAATTAAAAATCAGTTCCACCAACTTGGCTATGGCCACATTTGattaattagtaattttttttttgtcataattttatcccttgtttttatttttacttaattattgTAGCCCAAAAATTAGGCCATACCTAAATGAAAGGAATTTATTAAATAGACTTAAAATTATGACAACGATTTACAATTTGACAATGTATTGCACAAGCCATTAGACAGTCAATGCTGAGACAATgagaaaagtaaaaagaaaatcagtgCCAACTCATACAAACATGTCCATCAgctataaacaatattaattaatatcattacaattaatTCATATCATTACAACAAAATCTAGAGTGAATACAAGATGGGTGCttctaattattatataatcttGGAGCACTTGTCTGACAGTTGGAGAAAATTTTCACTATTACAGCAAGAACAGTCGATGTTATTgggcaaacaaaaaacaaatcccAAAGTAAGTGTATACAaggttttaattatttgcacaaacacaaaaaaggagGAGAACCCATTCTGACCGGTAACAAGTCATCATTCTTTGATCTTCTGGTTTTATTTTGGAGGAAACAGAGAAGAATCATCTCACTGGTGACCACTGGAGGGCTCAGTTCTTCTGGTGCCGAGCTCGTGGCTGAGACAGTCTGCAGAAAACTTAATAAAGCATCATCCTCTGAGTGAGCTGGTACACACCTGGTACAGTTCATTGGCACACTTGCGGCAGAGGTTGTGCAGACAGGGCAGAATGACCACTGGTTTCGTGAAGACCTCCTCACAGATGGGACAGATGAGTTGTTTCTCCAGCGTCCCCATCGAGGGGTCTTTGTGGTAAGAGCTTATATCCAGTGGAAGAGACATAGCTGCGTGTCCCTGCTGACCTCACACTCGCTGGGAATTAAGATCGGAGAGTGAAACCACAGCCAAGTAGACGAGACGCCACCGTCTTCATGTCCATTCTCTCGAGGCCCCTGTGCTTGAACAGCGCGATGGGACCTGTGCTGGTTTGCAGCTgaacatatgtatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231769 lncRNA upstream 12081 10829167 ~ 10901823 (+) False G156496
TU231767 lncRNA upstream 12081 10881894 ~ 10901823 (+) False G156496
TU231764 lncRNA upstream 12081 10895108 ~ 10901823 (+) True G156496
TU231765 lncRNA upstream 12081 10895108 ~ 10901823 (+) False G156496
TU231768 lncRNA upstream 12081 10895108 ~ 10901823 (+) False G156496
TU231851 lncRNA downstream 113386 11033791 ~ 11035495 (+) True G156551
TU231865 lncRNA downstream 156957 11077362 ~ 11078675 (+) False LOC122328437
TU231864 lncRNA downstream 163383 11083788 ~ 11085604 (+) False LOC122328437
TU231887 lncRNA downstream 203687 11124092 ~ 11126634 (+) True G156572
TU231883 lncRNA downstream 228458 11148863 ~ 11152047 (+) True G156568
XM_043225172.1 mRNA upstream 21359 10884466 ~ 10892545 (+) True ptk6b
XM_043225173.1 mRNA upstream 29601 10874824 ~ 10884303 (+) True srms
XM_043225170.1 mRNA upstream 43153 10786884 ~ 10870751 (+) True nol4lb
XM_043225171.1 mRNA upstream 43153 10786884 ~ 10870751 (+) False nol4lb
XM_043223977.1 mRNA upstream 141705 10765862 ~ 10772199 (+) True commd7
XM_043224407.1 mRNA downstream 14558 10934963 ~ 10938573 (+) True gid8b
XM_043224408.1 mRNA downstream 14665 10935070 ~ 10938573 (+) False gid8b
XM_043224390.1 mRNA downstream 18990 10939395 ~ 10948900 (+) True slc17a9b
XM_043225380.1 mRNA downstream 120675 11041080 ~ 11049656 (+) True rnd1a
XM_043224234.1 mRNA downstream 137754 11058159 ~ 11062247 (+) True prim1
unassigned_transcript_2617 other upstream 11764 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 213009 10698927 ~ 10700895 (+) False G156414
TU231625 other upstream 341658 10563344 ~ 10572246 (+) True G156399
TU231621 other upstream 359184 10551097 ~ 10554720 (+) True LOC122329061
TU231564 other upstream 496006 10415671 ~ 10417898 (+) False LOC122328383
XR_006247906.1 other downstream 154686 11075091 ~ 11075166 (+) True LOC122329336
XR_006247905.1 other downstream 155257 11075662 ~ 11075737 (+) True LOC122329335
TU231904 other downstream 254016 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 592220 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 593368 11513773 ~ 11513846 (+) True trnan-guu_36

Expression Profile