RNA id: TU231865


Basic Information

Item Value
RNA id TU231865
length 497
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC122328437
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11077154 ~ 11085604 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCACTAGTGAATTCACGATGTACTCGCTCATTATGTAGGCTCTAATTTGCAAATTATGAACACAGAAAAAGTTATTTGGCTTTAAGCTAACGAGCACTACGTCGCGGTCTTTGACTGAATCAAGTTTGCACCGCGAACGAAGCCCCTCGACATCCGGAAACACGCGGGAACTGCGACTCGGGGGAGGAGCTTGAACCATCCCACTCAGATTCACTGTGCAGTTCCAGCTCTCGCAGTGATGTACAGTGCGGTGGGTTTGCGCTGGCTTGGCACGTTCATCTCTCTCCCACTGTTCAGGCCTACTATGAGGTGTTTGCAGGAAACAGACTGAAGTGGACCGACACTGGACGCTGTGCTAAAAACTAGTCATAAAGGGATAGAGAGCTTTAAAACAGACTTCCCAGGTCAATGGATGttcattgcatttaatatttaagagtCTGGATATAGTTGTAATGTCAGTATTTGTCCagaataaatgatcatttattgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231851 lncRNA upstream 41867 11033791 ~ 11035495 (+) True G156551
TU231773 lncRNA upstream 156957 10913904 ~ 10920405 (+) False G156497
TU231764 lncRNA upstream 175539 10895108 ~ 10901823 (+) True G156496
TU231864 lncRNA downstream 5113 11083788 ~ 11085604 (+) False LOC122328437
TU231887 lncRNA downstream 45417 11124092 ~ 11126634 (+) True G156572
TU231883 lncRNA downstream 70188 11148863 ~ 11152047 (+) True G156568
TU231912 lncRNA downstream 132366 11211041 ~ 11243036 (+) True G156590
TU231915 lncRNA downstream 140360 11219035 ~ 11313603 (+) True G156592
XM_043224227.1 mRNA upstream 1431 11068486 ~ 11075931 (+) False naca
XM_043224230.1 mRNA upstream 1431 11068486 ~ 11075931 (+) False naca
XM_043224231.1 mRNA upstream 1431 11068556 ~ 11075931 (+) False naca
XM_043224229.1 mRNA upstream 1431 11068589 ~ 11075931 (+) True naca
XM_043224232.1 mRNA upstream 1431 11068699 ~ 11075931 (+) False naca
XM_043224013.1 mRNA downstream 7191 11085866 ~ 11098542 (+) True nfascb
XM_043224012.1 mRNA downstream 9126 11087801 ~ 11098542 (+) False nfascb
XM_043224014.1 mRNA downstream 9126 11087801 ~ 11098542 (+) False nfascb
XM_043224015.1 mRNA downstream 9126 11087801 ~ 11098542 (+) False nfascb
XM_043224016.1 mRNA downstream 9126 11087801 ~ 11098542 (+) False nfascb
XR_006247905.1 other upstream 1625 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 2196 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 153374 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 175222 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 376467 10698927 ~ 10700895 (+) False G156414
TU231904 other downstream 95746 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 433950 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 435098 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 437124 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 439790 11518465 ~ 11518536 (+) True trnae-uuc_33

Expression Profile