RNA id: XM_043224125.1


Basic Information

Item Value
RNA id XM_043224125.1
length 3413
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC122328437
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11077154 ~ 11085604 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGGAGCTACTTCTCGAGAAAAAGTTATTTGGCTTTAAGCTAACGAGCACTACGTCGCGGTCTTTGACTGAATCAAGTTTGCACCGCGAACGAAGCCCCTCGACATCCGGAAACACGCGGGAACTGCGACTCGGGGGAGGAGCTTGAACCATCCCACTCAGGGCAGATTCACTGTGCAGTTCCAGCTCTCGCAGTGATGTACAGTGCGGTGGGTTTGCGCTGGCTTGGCACGTTCATCTCTCTCCCACTGTTCAGGCCTACTATGAGGTGTTTGCAGGAAACAGACTGAAGTGGACCGACACTGGACGCTGTGCTAAAAACTAGTCATAAAGGGATAGAGAGCTTTAAAACAGACTTCCCAGacatttattcCATGATTCTGGTTCTGCTGCCAAACCTCGTTCAGTCCTCATTCACATCAGCTGCTtggtctctgttgttgttggAACGTCATTGATGGGTTGGTACCTCGACAAAGCCCAGTTCACTCACCTGGGTTCAAAGCGGTTCCGGTTAGTGTACAAAATAAAGTATCTGCTCACAaacatcagaaatgtttctcatcTTGTCAGGAGGCCTCCGAGGTCATGTGAGAGTATCTACTCCTCTTACTCTACAAGGAGAATCCCTCTCAAATCTCACAGATCAAAGAGGACTATCAAACGTTTTGGAGCAATTAGCAGTAATACgaaatatgcaaatgcattgGGTTTCGAGATATATCGATTATACTCAAGCTCCAGCAGAGAGACTTTCAAAGCAGAAGCTCCCATTGGAGTTCAACAGCACAGCAGGACTACTTTTCAGCTGCATCTACTTAGACTGAGAATAGGAGAGTCTTTTAACCATCTCTCTAGACACATAAACTTGTACTTTAAGCAGAAACAGGTGCCTTTGGTAGATCATGGGAAAAGTGGATGGATGTCTGGAGTTCAGGAACCATTAACCAGAACATCAAGACAAGTTCAGATGGAAAAACGCACTGCAGAATCCGGAGCTTTTATAGGGACACCTCCCAAAGAGCGGGTCTGTCAATCTTTCCCACATCAACCTTTGACCTCAGCCTATCCTGGACTGCAGCTGTTCCACATCAGTTCCTTGGCAAACAGATTTGGGGAGAGTTACAGCTATGTGGCCAATCACATTAACTCTGCATTCTCTAGAAATCCTAAGAAAATTCATATTGAAGTATCATCAGATGATGGGCTCAAACGGTCTACAAGCAGAAAGCGAAGAGTTATGGGTAATAAAAGTGCTCAAACTCAGTTAAACATTAGTACAGTTACAAGACCAGAGATTCATAACAATGTATCTAGTTCCTGGGATGAAGGATACCTCCACTTTGCCCGTCACATCAATCGATACTTTGGAGTAAAAGTAGCAGATACTGTTGAGAAATCATCACATACTGAGACCGAAATCCTGAAGACTTCAGTCTCCCCAGATGCTTTACATAGACTTACAGATCCACTTCTTCAGCCCAAATCTCCAGGCTTGTTCCACATGAGCAGTCTCGCCACACACTTTGGGGAAAATTACACTTACATGGCCAACCACAttaacagctactttaaaggatCTGCAGCTTCAGAGAACGAGGAGGTGGATGGAGAGGTAAACCTTTACAGAGGTTCACATGAGTACACTGAGATCCGGGAAAAACCAGTGTCCTTTTTAGAGTGTCTGTTAAAACCCTCAACTATACCTGGCTTTGTGGGCAGCTACCTGGGGATGGGCTCTTCCGGGCGTAGTGACCAGACCACAACTATAACAACGACCCCAGAGGAAATTCTGCATAAAACAtttttaaggAGGAGGAAGGCTGATGAGATGACTAAAGTTGTACTGAAGAGTCTGGAAAAGGCTACGTTGCCGTCCTCTATCACTTCCTGTGTGGAGGAGCTGAACGCTCACCTCATTCAGCACCCAGCATGCAAATCTGTGGTGTGGCAGAGAAAAGCAGCACTGCAGCTGCTTAAATACCGTCGGGCATTTGGGATGGATGTAAAACTTCAAGAAGCCATCAGGGAAACTCTCGCTCTGATTGGTTATGTGGATCCAGTCAGAGGGTGCGGGGTCAGGGTGCTTTCCATCGATGGAGGCGGAACCAAaggatTAGTTCCACTACAAGTGCTAAAACAGCTGGAGGCTCAGACAGGAAAACGAGTGTATCAGCTCTTTGACTACATATGTGGAGTCAGCACTGGAGCAGTTCTGGCTTTCATGTTGGGTCTAGCTCGTATCTCTTTAGATGAATGTGAAGAGATGTACCATCGCTTCGGGTCAGATGTTTTTCGACAAAACCCCCTGGTTGGTACTGTAAAGATGGGCTGGACACACTCCTACTACAACACAGAAACATGGGAGCTGATCTTAAGGGAGAAGATGGGGGAGGAGCTTCTAATTAAAACAGCCAGAGATGAGCTGAGCCCAAAGGTGTCTGCTGTAAGTGCCGTAGTAAACTGGGGGAAAAGTCCGAAAGCATTTATCTTTCGCAACTATAACCATGCTCCAGGACGACTGAGCCGCTATGCTGGAGGATCAGGATACCGGCTGTGGCAGGCCGTCCGGGCCTCATCTGCTGCTCCAGGATATTTCCAGGAGTTCCCTCTTCATGGCGATATACACCAGgaTGGTGGTCTTATCCTCAATAACCCCTGTGCTCTGGCTGTCCATGAAAGCCGACTGCTGTGGCCCAGCCAGTCCTTCCAGTGTGTGCTGTCTCTGGGAACTGGTCGCTATGATAACGCTAGAAGAGGGCCTGCTACCTCCACAAGTCTGAGAGCCAAAATCAGTAACCTGATATGCAGTGCCACCGACACAGAGGGTGTTCACACTCTGCTGGATGACCTCTTATCACCAAATGTATATTTCCGCTTTAACCCGATGCTGAGCTCAAACGTAACGCTGGATGAAAGCAGGTCTGAAGTGCTCCAGCAGCTACAGAAAGACACAGAGCTGTACCTGCACCGGAACCAGCCCAAACTGGAACGCCTGTGTGAAGTGCTGAGGACAGAACGCTCAGCGATCTGGAAAACACGGGACTGGATTGGAGGGAAAGCGTGGGAGCTGCAGCAACGCTGGGTTTGAGTGGACTTTACACAGAGCTGATGAGAATTCAGTTAAATGTGTGCAATTATCTGGACGAGAACTAAtacaaaaacatcattaaattaTGAAGATATGTCTTTACTGGTTGCACATGATTGTGAAAGGATTGTGATTGTGTTTTGACAAGTTACAAATGTTAGAGAAGTTACAAATCAAACAGCCATTTTAGACCAGAACATACGAGCACTTATGCCAATGTGAATTCTGTATGAatgtcagtatttttatttatgatgtattcatttctttatttctgttttaacaaaacaaaataaacctaAGAGCACTACTTAGCAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231851 lncRNA upstream 41794 11033791 ~ 11035495 (+) True G156551
TU231773 lncRNA upstream 156884 10913904 ~ 10920405 (+) False G156497
TU231765 lncRNA upstream 175466 10895108 ~ 10901823 (+) False G156496
TU231887 lncRNA downstream 38568 11124092 ~ 11126634 (+) True G156572
TU231883 lncRNA downstream 63339 11148863 ~ 11152047 (+) True G156568
TU231912 lncRNA downstream 125517 11211041 ~ 11243036 (+) True G156590
TU231915 lncRNA downstream 133511 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA downstream 160027 11245551 ~ 11311487 (+) True G156599
XM_043224227.1 mRNA upstream 1358 11068486 ~ 11075931 (+) False naca
XM_043224013.1 mRNA downstream 342 11085866 ~ 11098542 (+) True nfascb
XM_043224012.1 mRNA downstream 2277 11087801 ~ 11098542 (+) False nfascb
XM_043224014.1 mRNA downstream 2277 11087801 ~ 11098542 (+) False nfascb
XM_043224015.1 mRNA downstream 2277 11087801 ~ 11098542 (+) False nfascb
XM_043224016.1 mRNA downstream 2277 11087801 ~ 11098542 (+) False nfascb
XR_006247905.1 other upstream 1552 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 2123 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 153301 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 175149 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 376394 10698927 ~ 10700895 (+) False G156414
TU231904 other downstream 88897 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 427101 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 428249 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 430275 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 432941 11518465 ~ 11518536 (+) True trnae-uuc_33

Expression Profile