RNA id: TU231887


Basic Information

Item Value
RNA id TU231887
length 710
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G156572
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11124092 ~ 11126634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCCATCGAGACGATCCTCCTCTTCATCGCTAGAGAAATCTGTGCCGTTTGTCCTCACATGTTTGAGATAAAGCTGCACGTAAGCGTGTTTCTTGCTCTCCGGCGGGGGTAGATCCACATTGTTCGCTATGAGCTCCGACTTCAGCCTCTCTTTGGAGAAGAGAGCGGGGTCTTCCGCAAACACCGGCATGTCAGACGGGCAAAGCTGAAAATACAGGCCCCGTGTAAATGAGTTCCGACGTCGGCTTGGTTTTCCAGTGCACCGTCTGACTAGATAGTGAGCTCACTAGGGTTCGAGTGACCGACAGCTGTTCACAGGGGTCTCCCTTTAGGCGCCCGCAGAAACGCCTTTAATTCACTCGTGTGGCCGTGAAAAACAACGCAGACGCGGACAGTGAAGACACACGCGGATATTTAAGGATACCATGATGCAAGGGAGGGCAAATGTGAATATACCATCACCCCGATGCTCACCCAGACAGCTCCAGAGATTGGAGCAGCAAATTGCGTGTTTAACATTCAAAACTGACACTCTGTTATAACACTGCTATCTATTTAGGCATTATTATGTTGCTGTGTATTTCTTGTAAATGAAACTCGGTTCTCCTGTCCTGTTTTATCGCCCATGTTAGTTCATCAGACGATTGTGCGTGAAATGTGTACAGCGAATGCTCTTGATATATACTGGATTGATTATATCCACTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231864 lncRNA upstream 38488 11083788 ~ 11085604 (+) False LOC122328437
TU231865 lncRNA upstream 45417 11077362 ~ 11078675 (+) False LOC122328437
TU231851 lncRNA upstream 88597 11033791 ~ 11035495 (+) True G156551
TU231773 lncRNA upstream 203687 10913904 ~ 10920405 (+) False G156497
TU231768 lncRNA upstream 222269 10895108 ~ 10901823 (+) False G156496
TU231883 lncRNA downstream 22229 11148863 ~ 11152047 (+) True G156568
TU231912 lncRNA downstream 84407 11211041 ~ 11243036 (+) True G156590
TU231915 lncRNA downstream 92401 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA downstream 118917 11245551 ~ 11311487 (+) True G156599
TU231969 lncRNA downstream 205108 11331742 ~ 11332927 (+) True G156633
XM_043225340.1 mRNA upstream 18917 11100072 ~ 11105175 (+) True LOC122329135
XM_043224013.1 mRNA upstream 25550 11085866 ~ 11098542 (+) True nfascb
XM_043224012.1 mRNA upstream 25550 11087801 ~ 11098542 (+) False nfascb
XM_043224014.1 mRNA upstream 25550 11087801 ~ 11098542 (+) False nfascb
XM_043224015.1 mRNA upstream 25550 11087801 ~ 11098542 (+) False nfascb
XM_043224114.1 mRNA downstream 14845 11141479 ~ 11147587 (+) True mfsd4ab
XM_043225377.1 mRNA downstream 29188 11155822 ~ 11161895 (+) False LOC122329179
XM_043225378.1 mRNA downstream 29205 11155839 ~ 11161895 (+) False LOC122329179
XM_043225376.1 mRNA downstream 29277 11155911 ~ 11161895 (+) True LOC122329179
XM_043225296.1 mRNA downstream 38008 11164642 ~ 11168458 (+) True LOC122329091
XR_006247905.1 other upstream 48355 11075662 ~ 11075737 (+) True LOC122329335
XR_006247906.1 other upstream 48926 11075091 ~ 11075166 (+) True LOC122329336
TU231770 other upstream 200104 10913904 ~ 10923988 (+) True G156497
unassigned_transcript_2617 other upstream 221952 10902069 ~ 10902140 (+) True trnae-cuc_40
TU231641 other upstream 423197 10698927 ~ 10700895 (+) False G156414
TU231904 other downstream 47787 11174421 ~ 11177033 (+) True G156586
unassigned_transcript_2618 other downstream 385991 11512625 ~ 11512698 (+) True trnan-guu_35
unassigned_transcript_2619 other downstream 387139 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2620 other downstream 389165 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2622 other downstream 391831 11518465 ~ 11518536 (+) True trnae-uuc_33

Expression Profile