RNA id: TU232065


Basic Information

Item Value
RNA id TU232065
length 363
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G156699
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11654255 ~ 11654617 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTTCTGAAGCAGAATCTCTACAACGTTAAAATGTCCGGCTTGAGCTGCGAGTCCTAAAGGAGTATGTTCACAGACGTCAACGACATTTGGGTCGGCGCCAGATTGTAGGAGGAGGTATACAAAGTTATCCAAGCCGAGCACGGATGCTTCATGCAGAGCGGTTCTTTGAAGACTTCCTTTTTGGTCCACTGTGGCATTGTAGCGTAGCAGCAGCAGAGCCAGGTCATACTGGTCATTCTTTATGGCTGGAAAAAAGGCAATTCATGGATTCAAACCAATACTGATGATATGATCATTGTAACATTGaatctattttattatgttatacaCTATTTTTgactacaaaatataaaactaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232064 lncRNA upstream 95 11653380 ~ 11654160 (+) True G156698
TU232052 lncRNA upstream 3148 11614130 ~ 11651107 (+) True G156690
TU232041 lncRNA upstream 98336 11540640 ~ 11555919 (+) True G156685
TU232039 lncRNA upstream 113940 11539615 ~ 11540315 (+) True G156684
TU232037 lncRNA upstream 119338 11534590 ~ 11534917 (+) True G156682
TU232066 lncRNA downstream 299 11654916 ~ 11655316 (+) True G156700
TU232067 lncRNA downstream 1178 11655795 ~ 11656380 (+) True G156701
TU232236 lncRNA downstream 42797 11697414 ~ 11745778 (+) False kctd6b
TU232232 lncRNA downstream 62154 11716771 ~ 11745343 (+) False kctd6b
TU232239 lncRNA downstream 62154 11716771 ~ 11746570 (+) False kctd6b
XM_043224284.1 mRNA upstream 16232 11634276 ~ 11638023 (+) True LOC122328536
XM_043224285.1 mRNA upstream 16232 11634276 ~ 11638023 (+) False LOC122328536
XM_043224590.1 mRNA upstream 124594 11527406 ~ 11529661 (+) True apobec2b
XM_043224589.1 mRNA upstream 129387 11520750 ~ 11524868 (+) True si:dkey-109j17.5
XM_043224592.1 mRNA upstream 133650 11518832 ~ 11520605 (+) True ccdc115
XM_043224116.1 mRNA downstream 31095 11685712 ~ 11693491 (+) True atp6ap1lb
XM_043225498.1 mRNA downstream 41199 11695816 ~ 11704390 (+) True slmapb
XM_043225499.1 mRNA downstream 41199 11695816 ~ 11704390 (+) False slmapb
XM_043224289.1 mRNA downstream 51142 11705759 ~ 11722286 (+) True flnb
XM_043224291.1 mRNA downstream 68539 11723156 ~ 11726492 (+) True abhd6b
unassigned_transcript_2622 other upstream 135719 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 138384 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 140409 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 141557 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 477222 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2399747 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2402068 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2645084 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 3029373 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 3057530 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile