RNA id: TU232086


Basic Information

Item Value
RNA id TU232086
length 2531
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G156719
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11047145 ~ 11053295 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcttttttttttttttttttttATTGACCAAATCCAGGTTTTAGTTAATTTAAGAGTGACACATGACGTCAGAGACAAGGgaaaataatcaataaacaatattcaatataaaatagATTGTCTGAAACTAAAGAACAAAACAGAACCAGCAATAATCAACTATTAATAAGTTACAGTTACATtgcacacacaatcacacagtCTGTTCTGAATTAGTTTGCTTCACAGACTTCATTTAAAGGGCTGTACAAAACTGATTATGCACAACATATGTACGTCCAGACTGCAGTAAAAGGAAGATTGTGGAGATCCACCACATCAAACATATAACACGTAAGAGTGCTACTAAACCAGACAACAGTAACAAATTCATATCAAGATGATGGTCTGTGAGATGATTCATGTTTCAAACTATAACTATAAGCTATAGCCATGAAAAAGCCATTTGTTATGCTACAGTGAGAAACTTGTCCTTATTTTCACTTTGTTTACaccctgtttctctctctccacttcTCTCGAGTGGTTTTCGGACGTGTAGTCCAGCTTAAGTGACTTGTCTGTTGCTAAGTAACGGTGTAGAATTGCATGAATTGATGAACGACCTCCTAAAGTTTCTTTCAGATGAGCTAGAGTGAGAATTTACAAAGtcaatgatataataataacaaagttGTACAAATGCGTGGTTAAGGCAAGACCAGATTATATACAGCATTTTCATTCTCATTCTCTAGACAGTGACTATGTAAATTTAGATTTGAATGAATGTGCAGTTTTCACAATATCCAGTGCTacaacatttttggattaaattagTGAAAATTACCCATCATTTATCTTTccgaaaataataataataataataaccttttTCGGcgcaaaacaaagtaaaacgtGAATATTGTGTAGTATTACAGtttcaaaatttttaaatgtaatttatggcaaagctgaattttggaAGTTATCCTGAGGTCAGATTCTGCATAATGCTGTCTCGTCTGACTTCTCAGTTCATTTCTACTTGGCCATTTATAAGCCCAAAGTGAGGATTTAGTTGTTTTATGATTAAGCATTACACAACCAGGGGGTTGTGGGATTTAAGACCGAGATTACCAGAATGAGGCTTAGCATGAGAGGAGAGTCCTCTGTGACAGTGATCCGACCGAATGCATGAGAATCACTGAAATTATAACGCAATCTAATGTCCAGCCTCAATTTTAACCAGTAACTTTACTACATAACAATAGAATCTGTTCTTTGCAGGCCTGCTATTGAGAATTAGGTGGAAGAttactgtaaaagaaaactCAACTGCAACATTCAAATTATCTTCTCGCTTATGCAACATTGATCAGTTTTGGTGGACTGCAGTGTCTCTTAGTAATCCCCCATGACCTTTCCAGTCCATCTCTAAAATTACTTTACTAAAAGATCTCGTTTTCTATAAAAGAGCAGTTGGAACATCTGGAAAGTGTCTTTGTGGCAATAACTCCTGCTCTATTGAGAAATGGCCCGGCGATGCTGGGCTTCTTCTCATTGGCTGAGATTTATGACCTGTTCTCTTGGGGCAGAAAGCGCATGAAGGACTACAgtaaagatagagagagagtgaaagagtgtGTCAGCATGTCCAATACATCTGGATGTACCAATGTGATTGGATGCTTTATTTAGCAGATTTATAACATTGTCCGCCTTTTTTAGGAGGACATAAAATCTTGTTTGGCTCCTCCCCTCATGCTTGCATGAGTTCTCACATCGTAGATCAGTGCAAGCCAATACAAGCAAAGCATAATTCTGTACTGAAACAGTAACTAATGCCAACCTGTATTCAATCATCCTCTCGCTTTCCATTCAACAATCGCATCCATGTTCACTAAAGTGCGTACTGTGTAACACATCCTCtttctttaaacattaaattacgTTCACAGCTCAACCCTCATTCCCACGCTATCTACCCATAAAAATACAGACAGTCCTGTACATTTCGTTTTTCGACTGACTGTTTTGTTCACTGATACAAAATGCAGCTCATGTAAAGGCTGGTAAAGAGGATGTGTAACAGCCGAAAACCTTAAACAATGGCAGCAGCTCTTAATTGTTGGGATGAGTGTGTTTGCAGGTGGGGTGTCAGaatggaagaagaaaaacataagTGTAGAGAGAGGGAGGGGTCATTAAAAGTCATGACCTCTCCTTTTCTCCACACCCCCCCTCAACACTTTCGAAGAGCGAAAATAAGGTTTTTTCTGGAGTTGGAGTGGCGCGCATAGAGCTCACATGATGGAACAGCTCTTGGTTCTCTCCTTGCTGAAGGAGGAGGTCAGGAGCTCTGCTTTGCTGGGCAAGTGAAGCAGGCGTTTGGACAGCCGGCGAGTGGGGCTTTGCTTTATAGGGGGCTGCAGTTTGTTAAGGCATGTTAGTGCCGCTGAGCGGAACACGCTGTGGATGCTCTTCTCCGAAGTGAATGCAGAGCACTCCAGGTACACCTCTGCTCCTACCTGCTTGGCCAACAAGGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232081 lncRNA downstream 11650 11033742 ~ 11035495 (-) True G156715
TU231828 lncRNA downstream 87299 10959635 ~ 10959846 (-) True G156538
XR_006247879.1 lncRNA downstream 164493 10880591 ~ 10882652 (-) True LOC122329022
TU231736 lncRNA downstream 318897 10727964 ~ 10728248 (-) True G156478
TU231724 lncRNA downstream 344324 10702596 ~ 10702821 (-) True G156471
TU232093 lncRNA upstream 18115 11071410 ~ 11075961 (-) True G156726
TU232094 lncRNA upstream 18115 11071410 ~ 11075961 (-) False G156726
TU232095 lncRNA upstream 18115 11071410 ~ 11075961 (-) False G156726
TU232097 lncRNA upstream 18115 11071410 ~ 11075961 (-) False G156726
TU232098 lncRNA upstream 18115 11071410 ~ 11075961 (-) False G156726
XM_043224127.1 mRNA downstream 59733 10985385 ~ 10987412 (-) True bhlhe23
XM_043224409.1 mRNA downstream 112238 10923126 ~ 10934907 (-) True dnajc5ab
XM_043224410.1 mRNA downstream 112240 10923126 ~ 10934905 (-) False dnajc5ab
XM_043224393.1 mRNA downstream 124065 10915631 ~ 10923080 (-) False trim101
XM_043224233.1 mRNA upstream 9062 11062357 ~ 11068609 (-) True tfip11
XM_043224744.1 mRNA upstream 53646 11106941 ~ 11111646 (-) True pm20d1.2
XM_043224745.1 mRNA upstream 59714 11113009 ~ 11117428 (-) True pm20d1.1
XM_043224752.1 mRNA upstream 64387 11117682 ~ 11131520 (-) False lemd1
XM_043224751.1 mRNA upstream 64387 11117682 ~ 11131510 (-) False lemd1
TU231697 other downstream 369096 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 679776 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 807872 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 815226 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 1213463 9832128 ~ 9833682 (-) False zgc:153284
TU232124 other upstream 47449 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 464715 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 688105 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 688105 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 689375 11742670 ~ 11742803 (-) True LOC122329333

Expression Profile