RNA id: TU232094


Basic Information

Item Value
RNA id TU232094
length 4420
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G156726
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11071410 ~ 11075961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacaacaaaaaaccccaaaaacaaaatatgtaatttcatCAAGCCACGCCTTTATTTCTCTTGGGTATAAATTGTACAAACAATAGTGTAGATCAAATCAGCAACATCTTAATGTGACCCAGTCCCTGATCTCCATCTACATCATCAATTCCTGTAAAAGGCAGGGAAAAAAGCAAATTGAGTAACACTGCTTGAAACCATGGCACCACATTTAAGGACTGAGCTCTTCTCAGATTAAATTAACTGGCTTCAGGACAAATTCAGAAGAACGAAAGTCAAATGTTAATTCATCACAGAAgagttaaaacaacaacaactgtaaaatgcatttaattgaatgaCTTgagatcttttaaaataaagatagcATTTAAAACTCACCATAATAGCATTGACAAtgtcattattgttatttttcagtgCACGCACAGCCTTTGCCCTGGATACATTGGCCTGTGACATGACCAGCTCAATGTCCTTGACCTCCACTCCGGTCTCATCAACCTGCAAACGGTAAAGCACATCACTCATGAATGTGGacatttgcttttgttgaaCACAAGCATGTTCAGTATTATTCACTCACCTCTTCCTCTTCGCTCTCCTCCTGTACTGTCGGCGTCTGTGTGTTTTCCTGGATGTTTGAAACTGCTTCTCCTTGTACCTTGAACTTCTCTGCGGCTGCTAACTGAGCTTGCTGGGACAGATCTTCAATCTGAGGAGAGAAGAAAtcatcagaattttaatttgttttgtgagCTTCAATGTTCTTCACTTACACCACTGTGAAAGTTTCTCTCTCAGAACAGAAAGTTTGGCTTCATCAGACTCAGAAGAACGAAAGTCAAACTATTTAAATCATCACCAAGAGGTCACTTAGGACTAGATCACCAGACAAGTTTGCTACACAGAATATGTTATCAACCGAAACAGGGCCAAGATAGGTGTTGCTCACACCAACCTTAAATaagcagattttattttaatctttaccTTGGCCTCGCCAAAGACAATGTAAGTATCTGAAGCTGGACTTTTGTAGACATCTGGTTTAGTGATGACAAAGAGAATGTTCTTGGACTTGCGAATGGTTACTCTGGTAACACCAGCAACTTGTCTCAACCCCAATTTGGACATGGCCTggcaaaaagaagaaacaatacTGCATTAAGTCTAATTGAATTTGGGgttaaaattacattcatttagtTCCTGTGGATGACCCACCTTTCTCGCTTTCTTCTCACTcctgctttgttttgctttgctgaCTGGTTCCTCATCAATTTCAGCTGCAGCTGCAAGCTGTGAAACAGGAACGAAGTTTCAATCCATGAAAAATAGTACATGAAACAGTGAGAGAAAAAGTGTAGATAAAGTACTGCTTTTTGTATGTGTTGATCAAAATAATCTTACCTGTGcctgctgtgtttgtgtctgtgcagAGTCCTGCTCCTCCAGTTCAGGAACAGATTCGTCACTGTCAGATTCAGTGCCAGACCCTAAAACACCAAGACATGTTAAGTTCCTTTGCCATTACACACAGACGTTTACcataaatactgtttaaaaataaatctttgatTGCAATAGAAAAAAAGGGTGGATCAGTGTTCAAATTGCACAAATACTTTAATAcgctttaaatataaacaaacaaattgcCATTATGCTTATGATTCTGAATAATATTCACATTGATAAAACACTCAACTACTGGCCCTATGCTCTTTAAACTGCTCCCTGAAAAGCATCCAACTGAAGCTTTAACTTAACTCAAAGACTAAAAGGCAATTTCCAAACCACACAGTTACCAGGCTAACTCTAACCGATGAAGTGACCCTAAAGAATTTTGTAGAAGGAAACATTTTGCAATACGTAACAGCAGCATAAGCATAAAAAGcacaaagagacagaaaaagataCCCTTGTCGTTCTTGATGACTGGATCCAGTATGGATGGTGCTTTAACAGGTTTGGGAACAGGGGCTGGCTCAACTTTAGTGAAAAGGACAGGTTCAGTTTTAAGGGTAGGGGCAGTATCAACTTTAGGGGCAGAGGTGGGTTTAACTTTAGGGGCTGCAGCAGACTTAACTTTTGAAGCAGCAGCTTCAACTTGAGACGTAAGAACAGGCTTAACTTTAGGGGCAGGCTTGCCTTTAGGAGCAGCCTCAGCTTTAGGAGCAGGAGCAGCAGCCTTTGCTTTAGGCGTAAGCTTGCCTTTAGGAGCAGCCTCAGTTTTAGAAGCAGGGACAGACTCAGCTTTAGGGATAGGAGCACCGACCTCAGATTTAGGGACAGGAGCAGGCTTGTCTTTAGAAGCCACCACCTCCACTTTAGGAGCAGCGACAGGCTTAGCTTTAGCAGCAGGAGCAGCTTCAACCTTAGTGGTAGGAGCAGAATCAGCTTTGGGCGCAGTCTCAACTTTAGGAGCAGGAACAGGCTCAGCTTTAGGGCTAGGGGAAGACTTATTTTTAGGTGCAGGAGCAGCATCAACTTTAGGGGCAGCCTGAGCTTTAGGGGCGGGAGCAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGGGCGGGAGCAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGGGCGGGAGCAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGAGCGGGAGCAGCCTCAACCTTAGGGGCAGCCTGAGCTTTAGGGGCGGGAGCAGCCTCAACTTTAGGAGCAGCCTGAGCTTTAGGTGCGGGAGCAGCCTCAACTTTAGGGGCGGGAGCAGCCTCAACTTTAGGGGCTGGAGCAGCCTCAGCTTTAGGGACGGGAGCAGCCTGAGCTTTAGGTGCAGGAGTAGCCTGAGCTTTAGGGGCAGCCTGAGCTTTAGGTGCGGGAGAAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGTGCGGGAGGAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGTGCGGGAGGAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGTGCGGGAGGAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGTGCGGGAGGAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGTGCGGGAGGAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGTGCGGGAGCAGCCTCAACTTTAGGAGCAGCCTGAGCTTTAGGTGCTGGAGCAGCCTCAACTTTAGGGGCAGCCTGAGCTTTAGGTGCTGGAGCAGCCTCAACTTTAGGGGCGGGAGCAGCCTGAGCTTTAGGTGCGGGAGCAGCCTCAGCTTTAGGGGCGGGAGCAGCCTGAGCTTTAGGTGCGGGAGGAGCCTGAGCTTTAGGTGCGGGAGGAGCCTGAGCTTTAGGTGCGGGAGGAGCCTCAGCTTTAGGGGCGGGAGCAGCCTCAACTTTAGGGGCGGGAGCAGCCTCAACTTTAGGGGCGGGAGCAGCCTCAACTTTAGGGACAGCCTGAGCTTTAGGGGCGGGAGCAGCCTCAACTTTAAGGGCAGGTGGTGCTTTGTGTTCAGCTTTAGGAGCTTGCTTAGCTTTAGGGGCTTGCTTAGCTTTAGGGGCAGATTCAACTTTACTGGTAGAGACAGATCCTGCATTAGGAGCTGCTGGGGTAACAACAGGCATTGTACTAGGTGGCATAGGGGGGAAAGCAGGCATTGAAAAAGGATTCTCAGGTGGTAAGAGAGGTGGGAGATCATCATCCTCTAATGCTGCAGGAGCAGGTTTTGGAGGAGTAGCAGTGGCTGGTTTCACATTTGGCATTTGGGCAGGGCTAGGCTTAGCAGCTGCTTTTACAGGCAGAGGAGTCTTGGATTCTGAAACAGCAGGGGTTGCTACTTTTGGAGCTTCAGAGGCAACCTTGGGGGCTTCAGCTGCTTTGGGTGGACTGGAGACCACAGCTTCTGTAAATGACTTTGGTGCTGGGGCAGCAGATTTAGACGTTACTTTAAAGGCAACAGGAGCCACAGCAACTTTGGGAGAGACAGGGGAAGCATTTCCATCTCCTGCTGATTTTGCTACCTCTGGTACTGGTATAGCAAGAGATGGCACAGCTGCAACTGCTGCAGGAGCCTGAGCAGGCTTAGAGGCAGTGGGAGTTGCTTGCTCAGGTTCAGCAGGTTTAAAATTCTTTGCTTTCTCTTGCTTCCCTTGTTTGCCAGCCTTTACCACCTTGGGAGCAGTCTGCTCAGCTTCCCTAGCTGCAGGACAGTCAGCCAAAGGGGAGCATGGAGGGGTAGCACGAGGGCCAGAGGCAGATTTAGGAGAGGTAGGGGAGCTTGAAGAGGCAGAAAGAGAAGAGCGTTTCCTGCGTCCAGCAGGAACTGGCTTAGGAGCGGTGGTGTGAGGAGAAGAGGACAGCTTGGGGTTAGTTTTGCCCTCTTTAGGCTTTGCCTGAGAGGGAGCAGGGGCCGCAGCAGCAGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232088 lncRNA downstream 13415 11050293 ~ 11057995 (-) True LOC122329093
XR_006247882.1 lncRNA downstream 13435 11051236 ~ 11057975 (-) False LOC122329093
TU232086 lncRNA downstream 18115 11047145 ~ 11053295 (-) True G156719
TU232081 lncRNA downstream 35915 11033742 ~ 11035495 (-) True G156715
TU231828 lncRNA downstream 111564 10959635 ~ 10959846 (-) True G156538
TU232146 lncRNA upstream 86703 11162664 ~ 11163019 (-) True G156759
TU232149 lncRNA upstream 166639 11242600 ~ 11244820 (-) True G156762
TU232181 lncRNA upstream 277198 11353159 ~ 11353828 (-) True G156785
XR_006247856.1 lncRNA upstream 300216 11376177 ~ 11376688 (-) True LOC122328925
TU232213 lncRNA upstream 463662 11539623 ~ 11540045 (-) True G156812
XM_043224233.1 mRNA downstream 2801 11062357 ~ 11068609 (-) True tfip11
XM_043224127.1 mRNA downstream 83998 10985385 ~ 10987412 (-) True bhlhe23
XM_043224409.1 mRNA downstream 136503 10923126 ~ 10934907 (-) True dnajc5ab
XM_043224410.1 mRNA downstream 136505 10923126 ~ 10934905 (-) False dnajc5ab
XM_043224392.1 mRNA downstream 148330 10915631 ~ 10923080 (-) True trim101
XM_043224744.1 mRNA upstream 30980 11106941 ~ 11111646 (-) True pm20d1.2
XM_043224745.1 mRNA upstream 37048 11113009 ~ 11117428 (-) True pm20d1.1
XM_043224752.1 mRNA upstream 41721 11117682 ~ 11131520 (-) False lemd1
XM_043224751.1 mRNA upstream 41721 11117682 ~ 11131510 (-) False lemd1
XM_043224750.1 mRNA upstream 41721 11117682 ~ 11131510 (-) False lemd1
TU231697 other downstream 393361 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 704041 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 832137 10237096 ~ 10239273 (-) False ankrd52a
TU231501 other downstream 839491 10230546 ~ 10231919 (-) False ankrd52a
TU231376 other downstream 1237728 9832128 ~ 9833682 (-) False zgc:153284
TU232124 other upstream 24783 11100744 ~ 11105223 (-) True G156746
unassigned_transcript_2621 other upstream 442049 11518010 ~ 11518081 (-) True trnah-gug_32
TU232410 other upstream 665439 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other upstream 665439 11741400 ~ 11746620 (-) True LOC122328546
XR_006247903.1 other upstream 666709 11742670 ~ 11742803 (-) True LOC122329333

Expression Profile