RNA id: TU232234


Basic Information

Item Value
RNA id TU232234
length 1140
lncRNA type read_through
GC content 0.44
exon number 2
gene id kctd6b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11697414 ~ 11746570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACAGTGCGGCAGCCGTATCCCCGTCTTTGAGCAGCTAACGCTCAGTGTCCCGTACAGCCGCGATCAAAATAGACGATTAAACCCCTCAGGCCTGGAGACAGGTAAGGATGGGGTTATCTCATACAGTGTGACTGTTTAAAAAcgtctatttttattaatttgtcacTATTGCGTTAGGAGTTAGCAGGGAGCTAGCTGTGTGTTATAATAGCTGGTTAGCAGAGGTTACCgaaaacgctttattttattacaacgTGTTCATGTTTTTAACGTTACATGTCTCAGGCGCGGTGTCTGGGCGTTCTTTACTTCTTTCGAGGGAAACCGTAAGTATTTACGTTTGAGAAAACCTGTTTACATGCCGTACCCAAACAGCTAACGTGCTACTGAGCATCCAATTCATTGCGCTCTCTGTGTTTCTCATTGTGTTTTTCATTGACGTCTCTAATGTGTTACAAAAAGCGAGGTCTATACTCATTtatgtgtctcttttttttttttttttttttttttATCAAATAATGGACTTTATTTGTGATCACTGAAGCCTTGGTTCACACAGATGAATAAGTGCGAGTGCTTAGTTGGCGTGCAGGGCCTTCCAGCGGCTCAGGGGTCCACGACTGGGAATGTACTTCACCCCACAGCCATCAGGGATCACACGCTTCTCTGCCAGCATGTCATCAAAGTCACAGGCATTGAATTTCGTGAATCCATACTTCTTGGAGATGtggatctaaaaaaaaaaataaaaacaaataagccaCTTTTCACATGATCTCATCTAGATACTTTTAGAGTTGTGTTACGTACCTTCTGACGGCCAGGGAACTTGAACTTAGCTCTCCTCAGAGCCTCGATCACATGTTCCTTGTTCTGAGCCTTTGTGCGCACGGACATGATCACCTGGCCAATGTGCACACGAGCCACTGTGCCCTGAGGCTTACCAAAAGCACCGCGCATACCGGTCTGGAGCCTGAAGGAGGTGatgcacaaaacatttaaacttaCTAAACGCAGGTAAAACAGAAGGtctataagaaaacaaaaacaaagttgtgTCTCAATGGCCCCTTTAAGGGCTTAGCACTGCACAGCTAGGCTCATACACAGCCAAAGATTTAATGTCTGCAACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232067 lncRNA upstream 70908 11655795 ~ 11656380 (+) True G156701
TU232066 lncRNA upstream 71972 11654916 ~ 11655316 (+) True G156700
TU232065 lncRNA upstream 72671 11654255 ~ 11654617 (+) True G156699
TU232064 lncRNA upstream 73128 11653380 ~ 11654160 (+) True G156698
TU232052 lncRNA upstream 76181 11614130 ~ 11651107 (+) True G156690
TU232244 lncRNA downstream 18364 11763707 ~ 11822844 (+) True G156823
TU232272 lncRNA downstream 82398 11827741 ~ 11926375 (+) True G156843
TU232268 lncRNA downstream 159547 11904890 ~ 11925798 (+) False G156843
TU232326 lncRNA downstream 201341 11946684 ~ 11972922 (+) True G156881
XR_006247800.1 lncRNA downstream 284803 12030146 ~ 12037888 (+) True LOC122328486
XM_043224291.1 mRNA upstream 796 11723156 ~ 11726492 (+) True abhd6b
XM_043224289.1 mRNA upstream 5002 11705759 ~ 11722286 (+) True flnb
XM_043225498.1 mRNA upstream 22898 11695816 ~ 11704390 (+) True slmapb
XM_043225499.1 mRNA upstream 22898 11695816 ~ 11704390 (+) False slmapb
XM_043224116.1 mRNA upstream 33797 11685712 ~ 11693491 (+) True atp6ap1lb
XM_043224287.1 mRNA downstream 17086 11762429 ~ 11794733 (+) True flna
XM_043225315.1 mRNA downstream 51151 11796494 ~ 11799916 (+) True emd
XM_043224346.1 mRNA downstream 121375 11866718 ~ 11868437 (+) True cfap126
XM_043224774.1 mRNA downstream 177541 11922884 ~ 11924595 (+) True tnnc1b
XM_043225157.1 mRNA downstream 303418 12048761 ~ 12060362 (+) False tnnc2.1
unassigned_transcript_2622 other upstream 208752 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 211417 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 213442 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 214590 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 550255 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2309021 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2311342 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2554358 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2938647 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2966804 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile