RNA id: TU232236


Basic Information

Item Value
RNA id TU232236
length 514
lncRNA type read_through
GC content 0.46
exon number 4
gene id kctd6b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11697414 ~ 11746570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agtttttttttttttTGAAAATCAAATGGACTTTATTTGTGATCACTGAAGCCTTGGTTCACACAGATGAATAAGTGCGAGTGCTTAGTTGGCGTGCAGGGCCTTCCAGCGGCTCAGGGGTCCACGACTGGGAATGTACTTCACCCCACAGCCATCAGGGATCACACGCTTCTCTGCCAGCATGTCATCAAAGTCACAGGCATTGAATTTCGTGAATCCATACTTCTTGGAGATGTGGAAACCATCTTTACCGCAGGTCTTCACCATGTACTTGTTGGCGCAGATACGGGCAGCCTCAAGAGCTAGAACACAATTCACAGATTAGAGGGAGAAAAGAAATCAGAATGTGATAATACTGAGGTATTAGATGAACAGATGCTTCACCTTCACTGGACAGCTGCTCATATTCATCAGATACCATGTGAGCACACAGGGGGAACTCATCCACCTTAGCCTTCTTCCTGCCCAAGTCGAAGATCCTGATCTTGGGATCTGAGTTTGAGAGAGAGATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232067 lncRNA upstream 41034 11655795 ~ 11656380 (+) True G156701
TU232066 lncRNA upstream 42098 11654916 ~ 11655316 (+) True G156700
TU232065 lncRNA upstream 42797 11654255 ~ 11654617 (+) True G156699
TU232064 lncRNA upstream 43254 11653380 ~ 11654160 (+) True G156698
TU232052 lncRNA upstream 46307 11614130 ~ 11651107 (+) True G156690
TU232244 lncRNA downstream 17929 11763707 ~ 11822844 (+) True G156823
TU232272 lncRNA downstream 81963 11827741 ~ 11926375 (+) True G156843
TU232268 lncRNA downstream 159112 11904890 ~ 11925798 (+) False G156843
TU232326 lncRNA downstream 200906 11946684 ~ 11972922 (+) True G156881
XR_006247800.1 lncRNA downstream 284368 12030146 ~ 12037888 (+) True LOC122328486
XM_043224116.1 mRNA upstream 3923 11685712 ~ 11693491 (+) True atp6ap1lb
XM_043224284.1 mRNA upstream 59391 11634276 ~ 11638023 (+) True LOC122328536
XM_043224285.1 mRNA upstream 59391 11634276 ~ 11638023 (+) False LOC122328536
XM_043224590.1 mRNA upstream 167753 11527406 ~ 11529661 (+) True apobec2b
XM_043224589.1 mRNA upstream 172546 11520750 ~ 11524868 (+) True si:dkey-109j17.5
XM_043224287.1 mRNA downstream 16651 11762429 ~ 11794733 (+) True flna
XM_043225315.1 mRNA downstream 50716 11796494 ~ 11799916 (+) True emd
XM_043224346.1 mRNA downstream 120940 11866718 ~ 11868437 (+) True cfap126
XM_043224774.1 mRNA downstream 177106 11922884 ~ 11924595 (+) True tnnc1b
XM_043225157.1 mRNA downstream 302983 12048761 ~ 12060362 (+) False tnnc2.1
unassigned_transcript_2622 other upstream 178878 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 181543 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 183568 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 184716 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 520381 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2308586 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2310907 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2553923 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2938212 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2966369 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile