RNA id: XM_043224298.1


Basic Information

Item Value
RNA id XM_043224298.1
length 648
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122328549
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11730980 ~ 11732361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACGCTGACGCCGCCATGTTTTCCTGCTCTGTAACGCACGTGAAGGCGCTGCGGGATCAGTGTTGAAGGACGACTGTTCGCATGTCGTATTCTAACGATTACAACTCAGTTTTCACAAGTGCATATTATTGTGCTGTGCTTTAGAAGTGTCTTGCCGTTGActgtgttttgaaagaaaaagatgtTTAGAAAAAGTCACAacctaaaatacatattaactCTTGTACCAGGGAAAAGACGTTTTGGGACGTACAGATTTTTGCCCTTGTTTTTCTGTATCGGGGGTGTCATGGAGTGGATCATGATTAACGTGAGAATAGGAAAGGAAACGTTTTATGATGTGTACAGAAGAAAACAATCAGAGAGGGAATACCAGCAGAAGATTGAGGAGGGCTTTGTGCTCACAGAGTCTGAAGTCAAATGAAATCAtcagaacacactgaaaataaataatcatgatAAAGAGACTGAAACCAAAAATGGGAATGTTATTATGCATAGACTGTAGGGCAGCTGTGACATGGACTGTAATTATGAGGACATATGAGGTGCAGAAAGCTGCCAGCAAGGAAGATCACAtcttttgtattgtttaaatgataaagGTGGTTAtttgtgcaataaaaataatcgtGTCTTTTCTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232067 lncRNA upstream 74600 11655795 ~ 11656380 (+) True G156701
TU232066 lncRNA upstream 75664 11654916 ~ 11655316 (+) True G156700
TU232065 lncRNA upstream 76363 11654255 ~ 11654617 (+) True G156699
TU232064 lncRNA upstream 76820 11653380 ~ 11654160 (+) True G156698
TU232052 lncRNA upstream 79873 11614130 ~ 11651107 (+) True G156690
TU232250 lncRNA downstream 2253 11734256 ~ 11734937 (+) True G156828
TU232225 lncRNA downstream 10105 11742108 ~ 11745778 (+) False kctd6b
TU232229 lncRNA downstream 10105 11742108 ~ 11745343 (+) False kctd6b
TU232230 lncRNA downstream 10105 11742108 ~ 11745778 (+) False kctd6b
TU232237 lncRNA downstream 10105 11742108 ~ 11745778 (+) False kctd6b
XM_043224294.1 mRNA upstream 801 11727245 ~ 11730179 (+) False kctd6b
XM_043224293.1 mRNA upstream 801 11727248 ~ 11730179 (+) True kctd6b
XM_043224291.1 mRNA upstream 4488 11723156 ~ 11726492 (+) True abhd6b
XM_043224289.1 mRNA upstream 8694 11705759 ~ 11722286 (+) True flnb
XM_043225498.1 mRNA upstream 26590 11695816 ~ 11704390 (+) True slmapb
XM_043224290.1 mRNA downstream 6792 11738795 ~ 11741871 (+) True dnase1l1
XM_043224287.1 mRNA downstream 30426 11762429 ~ 11794733 (+) True flna
XM_043225315.1 mRNA downstream 64491 11796494 ~ 11799916 (+) True emd
XM_043224346.1 mRNA downstream 134715 11866718 ~ 11868437 (+) True cfap126
XM_043224774.1 mRNA downstream 190881 11922884 ~ 11924595 (+) True tnnc1b
unassigned_transcript_2622 other upstream 212444 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 215109 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 217134 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 218282 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 553947 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2322361 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2324682 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2567698 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2951987 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2980144 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile