RNA id: XR_006247799.1


Basic Information

Item Value
RNA id XR_006247799.1
length 815
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC122328486
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12030146 ~ 12037888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGCGCAGCAGCGCTCCTCTCACGAGCTGCGCGTTCACCTGTTCACATGCACTGTTCCCTCGTGGAGGAGGAGTCCACGAGGTCTTACCTCGCGCTGCATTATAAACAGACAGACTGAGAGTGACATCCAGCTaactgactccagatcagattGGGACAGGTCTCAGCGGGGCCGTGCCACTCAGTTCAGGCAGCCGGTTGGCTGTGACATCCATGGAGATCCTGTAACCCAGTGCCCATGGTTTGCCCATACGAAGGGGACGCCATACCTTTCAGCACGACCGATTTCAAATGGTGCTAGAAAACCCCAGTCCACTCTGAACACCAGAGGAAATCAGTCACGCTACAAAAGGGCCCCTCTGAAGGACGCTGCAGTGTGTCATAGCAGCTTAGCCATGGACCATCAGTGCTGAAAAGAGGGGACCTCCCGGAATCAGCATGGCAGCGGATCTATGTGAGACGTGGGAAATaaccagcacaaacacacacatatttttcgAAACATGCTTTAATTGCCTTTTAAAATTATACACTTGTATTATTTGACGCCTTTTTAATACATAACATTGAAATAACATTCTTCAGTCATTCGAGTTTAAATGAATATTCACTCATAAGGACAATTCACCAGAAATGGtgaattactcacccttgtgttgttccaaaccagaatgctgtcatttttagaacacaaaaaaagtcaaattattttcacacaaatatttgtGATAAATGGCACTTTCTAGTGTccgttaaaaacaaaataaaagtaggaagacaccttaaaatataaaGGTTTCAAAAGTGTCATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232326 lncRNA upstream 57224 11946684 ~ 11972922 (+) True G156881
TU232272 lncRNA upstream 103771 11827741 ~ 11926375 (+) True G156843
TU232268 lncRNA upstream 104348 11904890 ~ 11925798 (+) False G156843
TU232244 lncRNA upstream 207302 11763707 ~ 11822844 (+) True G156823
TU232237 lncRNA upstream 284368 11742108 ~ 11745778 (+) False kctd6b
TU232394 lncRNA downstream 139573 12174530 ~ 12174915 (+) True G156933
TU232392 lncRNA downstream 169299 12204256 ~ 12205395 (+) True G156931
TU232390 lncRNA downstream 169387 12204344 ~ 12205395 (+) False G156931
TU232612 lncRNA downstream 204892 12239849 ~ 12241401 (+) True G157079
TU232614 lncRNA downstream 210917 12245874 ~ 12246101 (+) True G157081
XM_043224774.1 mRNA upstream 105551 11922884 ~ 11924595 (+) True tnnc1b
XM_043224346.1 mRNA upstream 161709 11866718 ~ 11868437 (+) True cfap126
XM_043225315.1 mRNA upstream 230230 11796494 ~ 11799916 (+) True emd
XM_043224287.1 mRNA upstream 235413 11762429 ~ 11794733 (+) True flna
XM_043224290.1 mRNA upstream 288275 11738795 ~ 11741871 (+) True dnase1l1
XM_043225157.1 mRNA downstream 13804 12048761 ~ 12060362 (+) False tnnc2.1
XM_043225156.1 mRNA downstream 18417 12053374 ~ 12060362 (+) True tnnc2.1
XM_043225158.1 mRNA downstream 26759 12061716 ~ 12064341 (+) True tnnc2.2
XM_043225153.1 mRNA downstream 32148 12067105 ~ 12074465 (+) True slc35c2
XM_043225149.1 mRNA downstream 41296 12076253 ~ 12098773 (+) True LOC122329002
unassigned_transcript_2622 other upstream 511610 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 514275 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 516300 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 517448 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 853113 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2019407 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2021728 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2264744 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2649033 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2677190 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile