RNA id: TU232390


Basic Information

Item Value
RNA id TU232390
length 1052
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G156931
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12204256 ~ 12205395 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCTGAATTTAATAAACAAGATAAAGATACAAAGTGTTCTTGACATTGATATTTTCTTAATTCACCTATCAGTCTTGTCTGTGCATATTAAACGAAATCATTATGTGGAACCACAATGCAAGACGAAGGAAAACGTGAATTATTTCAGAACATACATAACAATGTCTTACATGATACATGTTAACAGTTAATTAATAACGAGTACTGTGTTCCATGCGGAAAAAAGGCTTAAGAAAACCAAATACTGAAAAACACTGACATgaagggagaaagagaaagaaaccgGTCTTTCAGCGATGATCAAATTAAGGCGTACACATAAAGATGACAAGGATACCTATAAAAACAATGATCAGTacttacagaaaaacaaatattaataagttGAAATATACTAAACAGatacaaaaatgaacaaagtaCAGTATCTAAACCTTAATTTGCACTATTAATGATGAATACAGggtatattttatagtaaatgTACACATCTTACTGATTTAAAGTGGATTTGAGGGATGAACAATCCAAGATTATACTGTAATGTAATAATCTATTCCCGGCAATGAGCTGAGGTTTTGTAGAAAGCACCAAGAAGTAGATCCTCATCAAATTGCTGTTATCTAAAACTGTGACGCTGATTGGTCATATTCCCAAAtattacagacaaaaaaaaaaattctgtgtgACCCAGTAAACCATTACTTCATGACAAATCAGctaaactgtatatataatcacaattatatatgtattttaggGAAATTTGAGAGCGAAAGCTTGGTCCTTTTTtagttttctaaatatacatgaatgaaaaaaaaataataatagtgagCTTAACAAATGACTGGTATAAATGAccacaaaaagaaatgaatgttgTAGAGCTGCAGTGGCCTGTTGAAATCACATACGGCAAGTATGATCACGTATGATGATCAAATTTGGCTCAAACGTTTCAATAGACCACACGTGCTTTAACTCAGTAAGAATAATGCTATCCActactgttaaaatgttttttcagctTGTATGCTGGTTtgagcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232394 lncRNA upstream 29429 12174530 ~ 12174915 (+) True G156933
XR_006247800.1 lncRNA upstream 166456 12030146 ~ 12037888 (+) True LOC122328486
XR_006247799.1 lncRNA upstream 169387 12030146 ~ 12034957 (+) False LOC122328486
TU232372 lncRNA upstream 171504 12030189 ~ 12032840 (+) False LOC122328486
TU232326 lncRNA upstream 231422 11946684 ~ 11972922 (+) True G156881
TU232612 lncRNA downstream 34454 12239849 ~ 12241401 (+) True G157079
TU232614 lncRNA downstream 40479 12245874 ~ 12246101 (+) True G157081
TU232604 lncRNA downstream 40822 12246217 ~ 12251978 (+) False LOC122328708
TU232617 lncRNA downstream 147695 12353090 ~ 12386381 (+) False G157084
TU232620 lncRNA downstream 156078 12361473 ~ 12386381 (+) True G157084
XM_043225168.1 mRNA upstream 225 12188494 ~ 12204119 (+) False ccdc30
XM_043225166.1 mRNA upstream 225 12188521 ~ 12204119 (+) True ccdc30
XM_043225169.1 mRNA upstream 225 12188521 ~ 12204119 (+) False ccdc30
XM_043225167.1 mRNA upstream 225 12188521 ~ 12204119 (+) False ccdc30
XM_043225352.1 mRNA upstream 17219 12183097 ~ 12187125 (+) True usp21
XM_043225469.1 mRNA downstream 7975 12213370 ~ 12220936 (+) False si:ch211-112c15.8
XM_043225471.1 mRNA downstream 7977 12213372 ~ 12220936 (+) True si:ch211-112c15.8
XM_043224226.1 mRNA downstream 16398 12221793 ~ 12228327 (+) True ttc34
XM_043225450.1 mRNA downstream 24573 12229968 ~ 12235977 (+) True zgc:154075
XM_043225451.1 mRNA downstream 24573 12229968 ~ 12235977 (+) False zgc:154075
unassigned_transcript_2622 other upstream 685808 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 688473 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 690498 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 691646 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1027311 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1848969 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1851290 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2094306 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2478595 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2506752 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile