RNA id: TU232414


Basic Information

Item Value
RNA id TU232414
length 1774
RNA type TUCP
GC content 0.44
exon number 9
gene id LOC122328546
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11741400 ~ 11746620 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGAAATTCAGTGTTCTTCCTTTCTTCCATTAGGTTGCAACCATGGGCCGCCGTCCAGCCCGTTGCTACAGATACTGTAAGAACAAGCCTTACCCGAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAGATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTCCCCCTGTGTGCTCACATGGTATCTGATGAATATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTACATGGTGAAGACCTGCGGAAAGATGGTTTCCACATCCGTGTGCGCCTGCACCCTTTCCATGTTATCCGCATCAACAAAATGTTATCCTGTGCTGGAGCTGATAGGCTCCAGACCGGTATGCGCGGTGCTTTTGGTAAGCCTCAGGGCACAGTGGCTCGTGTGCACATTGGCCAGGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccaCATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccACATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCACAAATAAAGTCCATTTGATTTTCAGACTTcgtttgtttttacaaattgcTTTTCTTACCTGCCATTTAAGGGAAATTTAACTTTTAGATTTagaaaatttaactttttatactGAGTGGATGTCATGTTTTCACAGAGCACTACAGTATGTTTAGCCACATGGCGTCAAGCATGACTTAACAGTATTTAAAAGGTAGTAAATGTCAGCAATACACATTAGGGGATTACCTTTGCGTAGTTTTGTGGATTCTATTTGTACTTTTGATAATTTCATTAATGCTCCCAGTCAaaaaatttcttttattatgGAATATTTCTCAGTAAcctacaaaacacattttacttgtattagtattttttttttcctatttatcaAAAAGAGATATTATAAAAGGTATTAAACAATGTTCCAGCACATTCTGCAGACATGTAAGGGTTCAAGTATATAACAGCTGTGTAACAGCAAAGTAAAATTCCACTTCAGGTGATGAATAATCCACTTTTGGTTCATATGATCGATTGCAGTAGCGGTAAAATGATCAGAATGAATGTTGTAGGCAGAAGACACGAAGCTTTGCTGTTTCTTGAGAGGAACCCAGACTTCTCAGTTTTGAGTAGCACTTCAATGGGGTAGTGATCACTCACTTCTAGAGCCTATAATAGACAGCCTTCAGTTTAAATCACATTCAAgtgagcaaaataaaacacaatcttGATTCTAGTTTACCTCTGCCTCTGTAAGGTGGAGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232213 lncRNA downstream 201355 11539623 ~ 11540045 (-) True G156812
XR_006247856.1 lncRNA downstream 364712 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 387572 11353159 ~ 11353828 (-) True G156785
TU232149 lncRNA downstream 496580 11242600 ~ 11244820 (-) True G156762
TU232146 lncRNA downstream 578381 11162664 ~ 11163019 (-) True G156759
TU232436 lncRNA upstream 15820 11762440 ~ 11763023 (-) True G156962
TU232440 lncRNA upstream 17089 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA upstream 34947 11781567 ~ 11782366 (-) True G156971
TU232457 lncRNA upstream 46983 11793603 ~ 11851710 (-) True G156972
TU232469 lncRNA upstream 308626 12055246 ~ 12061368 (-) True G156978
XM_043224297.1 mRNA downstream 3815 11736897 ~ 11737585 (-) True LOC122328548
XM_043224292.1 mRNA downstream 6454 11732231 ~ 11734946 (-) True ognb
XM_043224286.1 mRNA downstream 57993 11657491 ~ 11683407 (-) True dnah12
XM_043224283.1 mRNA downstream 84797 11651399 ~ 11656603 (-) True asb14b
XM_043224281.1 mRNA downstream 90129 11638613 ~ 11651271 (-) False tasorb
XM_043225317.1 mRNA upstream 53311 11799931 ~ 11801632 (-) True si:dkey-93l1.9
XM_043225316.1 mRNA upstream 53315 11799935 ~ 11801632 (-) False si:dkey-93l1.9
XM_043225314.1 mRNA upstream 55158 11801778 ~ 11805140 (-) True haus7
XM_043225318.1 mRNA upstream 59736 11806356 ~ 11807389 (-) True LOC122329113
XM_043224701.1 mRNA upstream 62149 11808769 ~ 11857968 (-) True atp2b3b
unassigned_transcript_2621 other downstream 223319 11518010 ~ 11518081 (-) True trnah-gug_32
TU232124 other downstream 636177 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 1063351 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 1374031 10365543 ~ 10367369 (-) False LOC122328779
TU231517 other downstream 1502127 10237096 ~ 10239273 (-) False ankrd52a
XR_006247884.1 other upstream 53302 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232479 other upstream 176224 11922844 ~ 11924650 (-) True G156985
TU233029 other upstream 1394458 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1533636 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2580346 14326966 ~ 14330784 (-) True G157909

Expression Profile