RNA id: XM_043224295.1



Basic Information


Item Value
RNA id XM_043224295.1
length 840
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC122328546
representative False

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11741400 ~ 11746620 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGTGAGTGCGTGGTGAGGGCGCGCTCCGTCGCTCTCGAGATTTGTCgaaaatttatttgtttacgcACTTACGAATACACGTTTCCGTCTTTTAAGTCGTTGTTATTGTGTCTATTACAGGTTGCAACCATGGGCCGCCGTCCAGCCCGTTGCTACAGATACTGTAAGAACAAGCCTTACCCGAAGTCCCGTTTCTGTCGAGGTGTTCCTGATCCCAAGATCAGGATCTTCGACTTGGGCAGGAAGAAGGCTAAGGTGGATGAGTTCCCCCTGTGTGCTCACATGGTATCTGATGAATATGAGCAGCTGTCCAGTGAAGCTCTTGAGGCTGCCCGTATCTGCGCCAACAAGTACATGGTGAAGACCTGCGAAGATGGTTTCCACATCCGTGTGCGCCTGCACCCTTTCCATGTTATCCGCATCAACAAAATGTTATCCTGTGCTGGAGCTGATAGGCTCCAGACCGGTATGCGCGGTGCTTTTGGTAAGCCTCAGGGCACAGTGGCTCGTGTGCACATTGGCCAGGTGATCATGTCCGTGCGCACAAAGGCTCAGAACAAGGAACATGTGATCGAGGCTCTGAGGAGAGCTAAGTTCAAGTTCCCTGGCCGTCAGAAGatccaCATCTCCAAGAAGTATGGATTCACGAAATTCAATGCCTGTGACTTTGATGACATGCTGGCAGAGAAGCGTGTGATCCCTGATGGCTGTGGGGTGAAGTACATTCCCAGTCGTGGACCCCTGAGCCGCTGGAAGGCCCTGCACGCCAACTAAGCACTCGCACTTATTCATCTGTGTGAACCAAGGCTTCAGTGATCACAAATAAAGTCCATTATTTGA

Function


GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232213 lncRNA downstream 204675 11539623 ~ 11540045 (-) True G156812
XR_006247856.1 lncRNA downstream 368032 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 390892 11353159 ~ 11353828 (-) True G156785
TU232149 lncRNA downstream 499900 11242600 ~ 11244820 (-) True G156762
TU232146 lncRNA downstream 581701 11162664 ~ 11163019 (-) True G156759
TU232436 lncRNA upstream 15853 11762440 ~ 11763023 (-) True G156962
TU232440 lncRNA upstream 17122 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA upstream 34980 11781567 ~ 11782366 (-) True G156971
TU232457 lncRNA upstream 47016 11793603 ~ 11851710 (-) True G156972
TU232469 lncRNA upstream 308659 12055246 ~ 12061368 (-) True G156978
XM_043224297.1 mRNA downstream 7135 11736897 ~ 11737585 (-) True LOC122328548
XM_043224292.1 mRNA downstream 9774 11732231 ~ 11734946 (-) True ognb
XM_043224286.1 mRNA downstream 61313 11657491 ~ 11683407 (-) True dnah12
XM_043224283.1 mRNA downstream 88117 11651399 ~ 11656603 (-) True asb14b
XM_043224280.1 mRNA downstream 93449 11638613 ~ 11651271 (-) True tasorb
XM_043225317.1 mRNA upstream 53344 11799931 ~ 11801632 (-) True si:dkey-93l1.9
XM_043225316.1 mRNA upstream 53348 11799935 ~ 11801632 (-) False si:dkey-93l1.9
XM_043225314.1 mRNA upstream 55191 11801778 ~ 11805140 (-) True haus7
XM_043225318.1 mRNA upstream 59769 11806356 ~ 11807389 (-) True LOC122329113
XM_043224701.1 mRNA upstream 62182 11808769 ~ 11857968 (-) True atp2b3b
XR_006247903.1 other downstream 1917 11742670 ~ 11742803 (-) True LOC122329333
unassigned_transcript_2621 other downstream 226639 11518010 ~ 11518081 (-) True trnah-gug_32
TU232124 other downstream 639497 11100744 ~ 11105223 (-) True G156746
TU231697 other downstream 1066671 10675684 ~ 10678049 (-) False LOC122328798
TU231532 other downstream 1377351 10365543 ~ 10367369 (-) False LOC122328779
XR_006247884.1 other upstream 53335 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232479 other upstream 176257 11922844 ~ 11924650 (-) True G156985
TU233029 other upstream 1394491 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1533669 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2580379 14326966 ~ 14330784 (-) True G157909

Expression Profile