RNA id: TU232440


Basic Information

Item Value
RNA id TU232440
length 3313
lncRNA type read_through
GC content 0.35
exon number 3
gene id atp2b3b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11763709 ~ 11857968 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtatatgtgtgtgtgtgtgtgtgtgtgtgcatgtgttgtgtctgtcctaaaagcataaaaaagctAGAAAAAAGAAGTACTAACAACGCAAAGATAATATTAATTTGAAGCTTAGACTAATTCAATTATAATGCGTCAGCTGATAActaaaagaagacaaaaacgTTGCAGCACCATTTAAACGATCattgttttacagcattttatgtaaaaaaaaaaaaaaaaaaaagtattattttagggCAATTTGTAGCTTCACTCCGAGAGAGTAAGCATTTTAAACAGAACTCATGCTcatgatattttaaacatttacgcAGCATGTTCATGTTTAAAATACACTACAGGGTAAAGGATTTGGGCAATCCCATCTCAGCAATTCAATGATCGTGGGTGGGATTTCGGGGGTTTTCCATCTCAGCATTGGCAATCAGCCTTACAACAAAAATGGCCTTTTTAATATGTTATACCTTGTTCGAAGTAGCTGAAACTGGAATTAAGGATTTCAGTGGGTTTGCCCAGACTCCACATTTAATGGTGTCGTATATTATTTTCACATAAAAGCCATTAAATTTCATGTTGTGCAGATGACACCAACAAATGCATCAACCCTTTAAACATGTTCAAATAATTACATGCATATCTGCTGGCCCTTTAAATACATTCGCACTCACACTTGCTTTCCTCATGTGTGGAATATATATAAGATTGTGAATATCTGCAGACTGTGGTCACCAGGGTAGGGAATCCATCTTATACTGCCACACCAtagttaaaagagaaaaaaaaaaaatcaaagataCTAAAGATGGACAATCCGTGAGGGTATCATAACTTTTGCACAATATCGAAGTTCACAGTGGACTTTGATAGACACGCTGTCTGGCTATTGGTTCTTATTTTAGCATTACTGAACAACAGAACAGTAAATCCCTATTATATATGTAAAGGCATGCATGATTCTTCATGACAGATGATAGTGTGTGTAATTCAGTTACATTCCATTGACCTTCCACTGATCAGTTTACCAGTTAGTACCATCCGGGGTTACCTCCTTTTACACCCCATAATCGTCTGAAACGGTACTGTTACCATCATACCACTTCAGTCGATGCATTGCAACTTATTACAATCATTTTGAGGAATGAGACCGGCACTTATGCAACAGACTGCCCTGCCCACAGCTCTGTGAAATACGCTTCACGACATGTACATATggatcttgaaaaaaaaaaaaaaaaaaacctttatctGTATAGAATACTTTTCTAGATTGTCCAGTTCAAAGAAACTGGCGAATATCGAAAGCAGACAATGCAAGCATGAGCGTCACTAGATCATGTCATTGCATTGGTCGGTCGTGTCTTTGCGGAGCATGTTGATATCATATCGCTTGCTTTACACGGTCATTGTTTGACTTCACTTTTGTCTGTTGATGCTTCACTGTGGCTCTTAAGCGGTTGGTGGACACACGTTTCTCTTCCCAGCGCATCTGTGCTGTCATTAATGTGCTATAGTCAATGCTGATGTTCTCCTCCTGATACTCTGGTGTGGAGCCTGGAGGTGGAGCAGTGTTGCACTGCCAATCTGACTACATGTTATATGCCAACGGACACATTGCTTAAAATGGGTTGACTTGTTCTACGACTAGCAGAATGTTTTCTTGATGGATCTTTAAAAGGAAACCCATTTATAAAGGAATATTCTGGGTTCAGTCTCtgcttttgttgaaaaaaatccaaaacacgTGGGATACAGCAAGGCTTACAATGGTAAATGGTAAAGTAAATGAGGAAAATCCATAAATAGGACAACCAGAAGATGCAAACAGCATGAATGTCAACACGTCAAATCCAAATGAACAACAGCATAGACCATAAATCTCTAAAATGAttgtaaaaaaagtattgtttaaaCCATTTTACAGGTCAagtaatacacattttaaaatgcaagtgCAAAGTTTATGATAATAATTGTCACATTCTTGCTTTTAAATCCTTCAAAAACCATTCAGTTGCATTGTAGGTGCCTCATCGCAACCTTgatttttgctgcttattttattattcataatccAATCAAAAATTGAGCTGCAACATTATGTCGCAAATGCTCAAGATGCATTGAACCCGGAATATTCCTTCAAGCAAAACTGTGTTATAGGTGCATGAGTGTGTCCGACCTTTGGCTGGGTTCGATCGGGCTCAGACAGTTCCAGTGGAGTCTCAAGTGTGGAGAGCGCTGGCAGGTCTCACAGACTGAACCCAGTTAAAGGCCCAGATACAATCAGCTGGCCAAAGTGGTGGTCAGGGAGGATAGGTCAGTGAACCTGCTATACcataataaagaaacatttcctaACCTTATCTTATCCTCAGCAAAGCTTAACTACCAAAATAGGCCTCAAGCTATGCTCGTCTCTTAATAATTTTGAATTCTAACAACTATATATAAGATGTATACCCCAATCATTGAACTCTCCAGACAGTGATGATATATATTACAGTGGCATATGTATGGTATCCCTCCTCTCCACCACAACAGACAGCCACTTTATCAAGACTCCTGATAGagtgacaaatatatatacgcatatatatatatatatatatataaaaaaaaaaagataatcaGATAATCCAAAACTCCATCGTCTGCCTTCATTTTGTTCCATTCTGTTGTAGAAAAATCACGCAAGGTAAggtgaaaaaatgtaatgtgaaaaagagtaaataatatactatatttaatataaaagttataaattaTTGTACAACTGCACCATCACTGTACATTTTGCCAAAATGTGCACATGTGCATCTTTTGTTTACGatttaagcacattttcttttgttttactctgttgtctcttctttctttcttcctttgcttttttgtaaagAATTAAAATTGAACAGCTTGTACATTATTATGATTACTATTATTATGactattatgattattattattattgtctttttcCATCAGTGCTCTTTTAGCTGATGGAAAAAACAGTTGCACATTCTCCTGAACATACACTTACTGCTCtacaatggaaaaaagaaaaaaaaaagagaaaaaaatatcaactattaaatatattaataattaccTGCCTGTTACTTAAGAGAAAAAAGTATCTATCTATGATGAAAGAACACAGCTGTATACTGTAGACTAAACTGTATGGAAATCTAAGAATTTAATGGGAAAATAAGTCAACACTTTTTGTCTgtataaaaatcaaatcaaagtatTCTACAATAATAACTTTGACCAGTGTCaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232436 lncRNA downstream 686 11762440 ~ 11763023 (-) True G156962
TU232213 lncRNA downstream 223664 11539623 ~ 11540045 (-) True G156812
XR_006247856.1 lncRNA downstream 387021 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 409881 11353159 ~ 11353828 (-) True G156785
TU232149 lncRNA downstream 518889 11242600 ~ 11244820 (-) True G156762
TU232469 lncRNA upstream 204664 12055246 ~ 12061368 (-) True G156978
TU232458 lncRNA upstream 210865 12061447 ~ 12064715 (-) True G156973
TU232460 lncRNA upstream 210865 12061447 ~ 12064715 (-) False G156973
TU232520 lncRNA upstream 248385 12098967 ~ 12099726 (-) True G157012
TU232550 lncRNA upstream 300778 12151360 ~ 12156300 (-) True G157035
XM_043224295.1 mRNA downstream 17122 11744720 ~ 11746587 (-) False LOC122328546
XM_043224297.1 mRNA downstream 26124 11736897 ~ 11737585 (-) True LOC122328548
XM_043224292.1 mRNA downstream 28763 11732231 ~ 11734946 (-) True ognb
XM_043224286.1 mRNA downstream 80302 11657491 ~ 11683407 (-) True dnah12
XM_043224283.1 mRNA downstream 107106 11651399 ~ 11656603 (-) True asb14b
XM_043224345.1 mRNA upstream 11305 11861887 ~ 11866571 (-) True ccnq
XM_043224342.1 mRNA upstream 17860 11868442 ~ 11880517 (-) False b4galt3
XM_043224341.1 mRNA upstream 17860 11868442 ~ 11880517 (-) False b4galt3
XM_043224340.1 mRNA upstream 17860 11868442 ~ 11880517 (-) True b4galt3
XM_043224343.1 mRNA upstream 30804 11881386 ~ 11900643 (-) False bgnb
TU232410 other downstream 17089 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other downstream 17089 11741400 ~ 11746620 (-) True LOC122328546
TU232418 other downstream 17089 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 18314 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 20906 11742670 ~ 11742803 (-) True LOC122329333
TU232479 other upstream 72262 11922844 ~ 11924650 (-) True G156985
TU233029 other upstream 1290496 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1429674 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2476384 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2730512 14581094 ~ 14589593 (-) True fitm2

Expression Profile