RNA id: XM_043224700.1


Basic Information

Item Value
RNA id XM_043224700.1
length 4537
RNA type mRNA
GC content 0.53
exon number 21
gene id atp2b3b
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11763709 ~ 11857968 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcctcctcctctccgtCCTCTCCATCCGCGCGCATAGCAGCCCGCGCGGATGCTGCGTCCACGGTCCTCAGCGCGCAGCTCAGCGAGGGGGCTCTCATCACACATCGCATATAAAATCCAAATACCGCATCACCACGCTTCACCGCCTCTTTGATTTACACGTTCAAGAAGAAGcgtaaaaacaacaaccaaaataCCTTTGCCTTTTTGATTCACTGTTCGGGACAGTCATCTCAAAACGATGTCTCCGTCTCTAATTTTTTCCTCTGCGGAACCTCCATCTAACCAGGCAACAACTGCACTATTTTAGGATCCATCATCTCCATCCGTAGTAAACACACCGCTGAACACCTGGGAGATAAAGGACGACATGATAAGAGCTACTGAGTGAATCCAGCCCTCTCGTGTTTCTCCAGGATAGCTATTCCCTTTTCCCAACAAACCACGGCAATGTCCTTGGAGCATGGCCTGgCTTCCTCGCCAATCCCATCATCCCGCACCCTTTGAATCCTAACGCATCAGATCTACACAATATCCCGCTCGGTTTTGCGCCTCCTCTTTGCTCTGGTTCTCTGTGTCCTGATGGATTGGAAGCGGCCTGATCCCTCGTTCTGTTGACCCTCAGGGCGAGGGGGTTGAGTGGGAGAGGACAGGATTTCTCCAAATACGCTAAAAGTGTCCGGCCATCGTTGTCCCGATTTCCTAACTCTGATGGAGAGTTAGAAGAACGGGAGGAACTAAAGGGGAGGGCGAGGAGTGGAGGAGCAAATACGAAAGTCAAAAAACTTGTGCCAAGAATCGTCACTAATACTGACCTTGTATTGCTGAAACCTCCTGGACGAGAAGAGGTCATATAGATCAAACATCGTGGACCCAGCACCCTAAGACTCAAGATGTCCACCACAGCGACTATGGGTGAGATGGCGAATAGCGCAGTGGAGTTTTACCCCAAGAGGggcggaggaggaggtggtgcaGAAGCCAACCATGCTGGGGACTTTGGGGTGACGTTGGATGAGCTCCGGTCCCTGATGGAGCTGAGAGGAGCCGAGGCCTTGCAGAAAATTCAGGACAGCTATGGAGACGTAGAGGGCCTATGCCAGAGACTCAAGTCTTCCACCAGTGATGgtTTGTCAGATAACCCAACAGATCTGGAGAAGCGCGGACAGGCATTTGGACAAAACTTCATACCCCCGAAAAAGCCCAAGACCTTCCTTCAGCTGGTGTGGGAGGCATTACAAGACGTCACCCTTATCATTCTGGAGATTGCAGCCATCATCTCCCTCGGCCTGTCCTTCTATCAGCCACCCGGACACGAGAGcgaggGTTGTGGAAATGTGTCAGGAGGAGCTGAAGATGAGGGGGAGGCAGAGGCGGGATGGATCGAAGGTGCGGCCATCCTACTATCCGTCATATGCGTGGTGCTGGTGACGGCCTTCAACGACTGGAGTAAAGAGAAACAGTTTCGGGGACTGCAGAGCCGCATCGAGCTGGAGCAGCGATTCGCTGTGGTGCGCAATGGAAACGTCATCCAGATCCCCGTGGCCGAGATGGTGGTTGGGGACATGGCCCAGGTCAAATACGGTGACCTCCTACCTGCCGATGGGGTCCTGATTCAGGGAAATGACCTGAAAATCGACGAGAGCTCTTTAACCGGTGAATCGGATCATGTGCGGAAGTCGGCCGACAAGGACCCCATGCTTCTCTCTGGTACTCATGTGATGGAGGGATCAGGCAGGATGCTGGTAACCGCAGTTGGAGTCAACTCTCAGAGTGGCATCATATTCACTCTGCTGGGAGCCGGGGAAggggaggaggagaagaaagaaaagaaagCCAAAAAGCAGGATGGAGCCGTTGCCATGGAGATGCAGCCTCTGAAGAGTGCGGAGGGCGGAGAAGtcgaggagagagagaagaaaaaagccAACGTGCCCAAGAAGGAGAAGTCTGTACTGCAGGGCAAACTCACCAAACTGGCTGTACAGATTGGCAAAGCAGGTCTTGTGATGTCAGCCATTACAGTTATCATCCTGGTGCTGTACTTTGTGATTGAGACGTTTGTGGTGGAGGGGCGGAGCTGGCTGCCAGAGTGCACGCCCATCTACGTGCAGTATTTTGTCAAATTCTTTATCATTGGTGTGACTGTGCTAGTGGTAGCTGTGCCTGAGGGTCTTCCCCTTGCTGTTACCATCTCCCTGGCCTATTCAGTTaagAAAATGATGAAGGACAATAACCTAGTGCGTCACCTGGATGCTTGCGAGACAATGGGCAATGCCACAGCCATCTGCTCTGACAAGACCGGCACTCTCACTACCAACCGTATGACTGTAGTGCAGGCCTACGTCAACGACCAGCACTTCCGTGAGATCCCTGAGCCCAGCCAGATCAACCATAACACCCTAGAGATGATTGTCAATTCCATATCTATCAACTGCGCCTATACCTCCAAGATCATGCCACCGGATGTGGAAGGTGGTCTGCCCAAGCAGGTCGGTAATAAGACAGAGTGTGGTCTGCTGGGCTTCCTGCTGGATCTGAAGAGAGACTACGTTCCTGTGAGAGAGCAAATACCAGAGGAGAAACTCTACAAAGTCTACACTTTCAACTCTGTACGCAAGTCCATGAGCACTGTGGTGCAGATGCCGGATGGAAGTTTCCGGCTCTACAGCAAAGGAGCGTCTGAGATCCTTCTCAAAAAGTGTTCCTCGATACTTGGTGCCAGTGGCGAAGCACGCAGCTTCAAGCCACGGGATCGAGATGAGATGGTGAAGAAAGTGATCGAGCCCATGGCTTGTGAAGGCCTGCGAACCATCTGCATTGGTTATCGTGATCTTTCTGGTGACCCTGAGCCTGACTGGGATAACGAAGCTGAAATTGTCACAGATCTGACCTGCATCGCAGTCGTGGGGATCGAGGATCCCGTTCGACCTGAGGTCCCCGAAGCCATCCGCAAGTGTCAGAGGGCAGGCATCACTGTGCGCATGGTCACCGGCGACAACATCAACACAGCACGAGCTATTGCTGCCAAGTGTGGCATCATTCAGCCCGGGGATGACTTTCTGTGCCTGGAGGGTAAAGACTTCAACCGAAGGATCAGGAATGAGAAAGGAGAGaTTGAGCAAGAGAGAATTGATAAGATCTGGCCTAAACTCAGAGTCCTTGCACGTTCCTCCCCCACGGACAAACACACTCTCGTAAAAGGCATCATTGACAGCACTGTAGTGGAGCAGAGACAGGTGGTGGCCGTAACTGGTGATGGGACCAATGACGGGCCAGCTCTCAAGAAGGCAGATGTGGGCTTTGCAATGGGTATAGCAGGCACTGATGTAGCTAAAGAAGCCTCTGACATCATCCTGACCGATGATAACTTCTCCAGCATTGTGAAGGCTGTCATGTGGGGGAGAAATGTGTATGACAGCATCTCCAAGTTCCTGCAGTTTCAGCTTACTGTCAATGTAGTGGCCGTCATCGTAGCTTTCACTGGGGCCTGCATTACACAGgACTCTCCGCTAAAAGCAGTACAGATGTTGTGGGTCAACCTGATCATGGATACATTTGCCTCTTTGGCTCTTGCCACCGAGCCGCCCACCGAAGCTCTGCTGCTTAGGAAACCCTACGGGCGCAACAACCCCCTCATCTCGCTCACAATGATGAAGAACATCCTGGGTCACGGAGTCTATCAGCTCGTCATCATCTTCACCCTGCTGTTTGTCGgagagaaaatcTTCAACATCGACAGCGGCCGTAACGCCCCCTTACACTCACCCCCATCCGAACACTACACCATCATCTTCAACACCTTCGTCCTGATGCAGCTCTTCAACGAGATCAATGCTCGCAAGATTCACGGCGAAAGGAACGTGTTCGACGGCATCTTCGCCAACCCTATCTTCTGCAGTATTGTTCTGGGAACATTTGGAGTGCAGATTGTGATTGTGCAATTTGGGGGCAAGCCCTTCAGCTGTGCCCCTCTCAATGTGGAGCAATGGCTGTGGTGCCTCTTCGTGGGAGTTGGAGAACTGCTGTGGGGTCAGGTGATCGCCACCGTGCCCACTAGTCACCTGAAGTGTCTGAAGGAGGCAGGCCACGGGCCAGGGACTGATGAGATGACGGAAGACGAGCTGGccgaggatgaggaggagatAGACCACGCTGAGAGGGAGCTACGCAGGGGACAGATCCTCTGGTTTAGAGGCCTTAACCGTATCCAGACTCAGaTGGAGGTAGTGAGTACGTTCAAGAGAAGTGGTTCGTTTCAGGGTGCAGTGAGACGTCGATCCTCTGTGCTCAGCCAGCTCCATGACGTAACCAATATTTCTACCCCCACTCATGTAGTTCTCTCCACTGCCAATGCAAGCGCCGCTCCCGGGAATGCGGGTGGTGAAAGCGTTCCGTAGCTCCCTTTACGACGGAATCGAGAAACCCGCGTCCAGGAATTCCATCCACAATTTCATGGCGCACCCCGAGTTTCTCATCAACGACTTCATCCACAACATCCCGCTGATCGACGACACCGACATTGACGACGAATCGG

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232453 lncRNA downstream 30579 11781567 ~ 11782366 (-) True G156971
TU232436 lncRNA downstream 49922 11762440 ~ 11763023 (-) True G156962
TU232213 lncRNA downstream 272900 11539623 ~ 11540045 (-) True G156812
XR_006247856.1 lncRNA downstream 436257 11376177 ~ 11376688 (-) True LOC122328925
TU232181 lncRNA downstream 459117 11353159 ~ 11353828 (-) True G156785
TU232469 lncRNA upstream 197279 12055246 ~ 12061368 (-) True G156978
TU232458 lncRNA upstream 203480 12061447 ~ 12064715 (-) True G156973
TU232460 lncRNA upstream 203480 12061447 ~ 12064715 (-) False G156973
TU232520 lncRNA upstream 241000 12098967 ~ 12099726 (-) True G157012
TU232550 lncRNA upstream 293393 12151360 ~ 12156300 (-) True G157035
XM_043225318.1 mRNA downstream 5556 11806356 ~ 11807389 (-) True LOC122329113
XM_043225314.1 mRNA downstream 7805 11801778 ~ 11805140 (-) True haus7
XM_043225317.1 mRNA downstream 11313 11799931 ~ 11801632 (-) True si:dkey-93l1.9
XM_043225316.1 mRNA downstream 11313 11799935 ~ 11801632 (-) False si:dkey-93l1.9
XM_043224295.1 mRNA downstream 66358 11744720 ~ 11746587 (-) False LOC122328546
XM_043224345.1 mRNA upstream 3920 11861887 ~ 11866571 (-) True ccnq
XM_043224342.1 mRNA upstream 10475 11868442 ~ 11880517 (-) False b4galt3
XM_043224341.1 mRNA upstream 10475 11868442 ~ 11880517 (-) False b4galt3
XM_043224340.1 mRNA upstream 10475 11868442 ~ 11880517 (-) True b4galt3
XM_043224343.1 mRNA upstream 23419 11881386 ~ 11900643 (-) False bgnb
XR_006247884.1 other downstream 11313 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232414 other downstream 66325 11741400 ~ 11746620 (-) True LOC122328546
TU232479 other upstream 64877 11922844 ~ 11924650 (-) True G156985
TU233029 other upstream 1283111 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1422289 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2468999 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2723127 14581094 ~ 14589593 (-) True fitm2

Expression Profile