RNA id: TU232469


Basic Information

Item Value
RNA id TU232469
length 5964
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G156978
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12055246 ~ 12061368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAAAATTGCTTATACTGATTCAAAAAAAAGTAGCGTACAGAtggaaattcatttttaaaatggagagagccGATAGTGTTCTGCACCACCCCCCTTTAGTTAAGCCGAGAAACCCTAAACCACTTGGGAAGGTGCTGTGTTGCAAATCTTCAGCGTGCCCTGAATAGCAAATGGTTCAGATCTCAAGTCCACCCCAACCAAAACCCAACCACACGAATGGCGACACTGGTACCCCAAACCCTGAAAAGCCTAAATCGAGTTTCCATGTATGGCATGTGTTTCCTGAGCAAGGAACTGTACAGACGTGGGAGAACTCAGAGGAGGGGGTTGTGGACTATATACTTTCAGGGAGAAATGGAAAGATTTACAAGGAGATTTTCAGGAGAGCAGAAAGGTTCGGTTTTGCAGTTTGCATATCATTGCAGCTCTGGAGAATTGCATTTATAGGAATGGCGAGAGATAACACCTCCATCAATATGACCTGAAGGCAGCAAGGTGTCAAAAGGATCACATGGATTTCCACCATGAGAAGAAAATATGGAAATCTGACCTTTTTCACCTTTcagaatttttatgtttaacttGCATGCTCCTGGCACAAACGCCGATGTTAGgattcaaaatgtatatttttcctGACCTTTCTTGGCCAGGTTATGTATGAAAATATCAGCGGAGACCAACAGACGAAATGATCAATATACTCTGCAACACTATGGATCTACTGGACAACCAAAGTGTTATGTATTTTGGACACGGGGTTCTGGAATCCAACTTGGTGGgatgttcttgtttttgtgATTGGGTGTAGAGAAATTATGGGCAAGGTGGGTGAGAAGATCACATGAGTTGCAGCTTTTAGGAATTTTGATATTTGGCCTCACAACAACCTTTTTAAGCTTGCAAATTgcatttagctttaaaaaaatgccaaaGCTGTAAGTTTTTACAGACTCAGATTCTGCGTAATTTTACATGACACAATCACCAAACAAACAAGCAGATTGGCCAAGACGTGCTTCTTTAATAGATTTGCATACGCCGCTTACATGTGAGCTAAAGAGATTCCGTATCGCCATGACAACATTAAGTCTTTTTCCGTGGCTAATGCTGTAGTTATTTTGAATCAATGTAAAGGGTGAAGGAGAGGGGAAGGGGTTTGAAGGAAACTTGCTGAATGTCTTGGGAATAAGCAGGTGTAGTAGCAGACAGCTGAAGGGAGAGGCGTAAGTGGTTTCCTCTTAAAAGGTTTGAAGGGTTATTTATAGATACCATCACAGTGTGGTCCCAGAAGAACACTTCCAACAAGATGGCACTGATCTATAATATTCTCTGTCCCTCAAATCAAATTCCAGCCTATCTTTGTTATTAGTGATCTGAACCAGAGTCTTTTTCCTTTAAACATCTCAGCATGGGTTGTTCTTGGGAGTCTTGACTGCTGTCATTAGCACTTGGAAGAGATggaatgttattttttcttacTGGACGTTCTCCATCATTTTAAGaaactctaaaataaaaaaaataaaaaaatgagatgGCATAAAATACAAGCCTCTTTCCTGGTATTGTTTAAACTCTGTCCACTCTGAACATGCTTTGCATTCAAATACTGTGATTTTTCTATAAGGAAATGGCTCTGTTCTCTCATTTCTTGGGATTCAAACGAACTGGAAGTCAGGAAAAACATTCCCCTGAGTATGTgtgtaattacatatttttatatatgtgtgtaattttatatGCTATAATAAACACTTGAAAGTCCTTAATTGGGATAAAACATGTTGTAGACATGCATATAGTTATCActgcattaaataacaaaatatctaACCAGACCGAATTTGCAGTCAAATTACGCAAGGGCTTTTATCATATGTATCTAAATTTAGCTATTGGCTCAGTATtttgtatacatatacaaaaaaataaataaagtataatctCTAGGTGACATGGAAATGGTAAtctgtttcttttattaataatctacttttacttttacagtcccactttattttaagcttcagttctcactattaactaattaCTGCTTACTGCTAAGGTAGTTGTAAAGTTTAGATCTTGGGTAAGATTGAGGATCTATATGTGCATTTCACACAGAATATGCGATTTAAACACTAATGAACAgacaatatgctagtaatatgcatgttactAGCAACTAGTTAGTAGTGAGAGTAGGTCTCtcatactaaagtgttacctttttttaccttttttcaataaagaataaaatttgCTTTACCATCAAAATCAAGCTTCCCGTCTTTGTTTGTATCTGCATCGGCCATGAGTTCATTTATGTCTTCTTCTGCCACTGGCTCACCAGTTGCACGCAAGATATCAGCAAACTCTTCACGATCAATGAAACCATCTTGGTTCCTGttggaaaaatataattttattgcagttttaatTGCAGAATTGTTTATGATTTTGTTGTCAAGCTAAGTGACTTGTCTTGTGATGTCAGGATCTGACTGTGATGCCAGGATGATTTGGAGGAGTGTTTTGGTTTAAAGCGGTCATGAAGTAAGAAACCAAACTTCCTTTAATCTGTTGACATATAATGGCCGTTCACATGTGCCGTCTTTTGTTCACTGAAGTTCGCTATTTCAAATGTAGACGCGCGGTTTGCACGCTCATAATGGAAGCAACGCGCTTGTTTTTTTCCAGGCGCCAcataaagataaaaacatttcaactttTCAGAAGGCCACAAGCACACCATGGGTCATCATTTGACCCGTAACAACATTGAAAGGTCATCCAAAATCAAGCAATAGTTTGTCAAAGCTGTACAAGTATaggtattttaaagaaaattgatCTGCTGCAAGCGATTTTTAGTCCTGGAAATCCATTAATCATTTGCTGAAATTTCCAcatcttcatatatatataaagtggctttaaagaacatttaagtTGACGGTCAGCGTGTAAGCTGTCACTGGTCCTCTTATAGCATCAAAACAAAGCTTATTCAAATGGATAAGTCAAGAAAGCATGCTCCCtttatgataattaaaaagCTGTCTCTCATTTCAGTATATCACAAcctcacaaaaatgaaaactctgaaatgaacaaaacagaATTGGCTGCAATGATCATTGCTACAAAAACACTTTGAAAACAGAAACCTTTAAAattcaaacacaaatacacactagagtattttgaaaatactttCACCAGTATCCTATTTCTACAGCTTCAACTGACTTTTTGCTGGCATTTTGTCCTACTTCAGGTCCTGAGAGATGGCGCCCTGGAATCTGAATGACTCTACTGCAGCCACAGTGCTGTCTTTAATGGTGAGTGGGGGGAGAGCAAGGGactcctgaagtccactatcatctccaATAATTTGACTGTGACATCCAGCTCTAGAAGAAACTTCAGAAGCTTGACAGAGGGATCAGTAAAGGTGCAGTCATATGTGTACAGAGGGAGATAATACATCCCTGGGAGCACCAGCGCTGATCACGAGAGTCCTGGATGTGAGTTCTCCCAGACTCACTAACTGCTTcctgtctgtcaggaagctgcttATCCACTGACAGATGGAGGTGGATACAGAGAGCTAGgCAAACTGAAGAGGATCCGGCAAAAGTCCTCCAGCTATGTCCTTCAGGTAGGCCACAATGAATCTTTTAAATGACTTCAGTGACCTCACAGACACGAAAGCGGAAAGGTCTGTAGTTGTTTTTGGGGACCAGAATGATAGTGTAGCCTTTTAAGCAGCGGGGGATTTCACAGAGATCTAGTTATCTGTTAAAGCTCTTTGTGAAGATGGTGGGGGTtcaaaaaagaaacagcattttctgtatttaatttcggggtaaaaaatttttaattaataaacgcAAAAGAACACACGCCTTGGGTCCATGTACTTTTTGCATTcattactttttcctttttcaacccagaaatgaaatatgaaaaatatggtTTCTTCCTGAGTGGTTCTAACGCTGATGAATAGACACAAActtattttcattattcaaattcgtatttcataaaatattgtaaaaattactgtacattaaacCTTCTAGCTTTTTAGAGTCTTTATAGCCAACAGACACTATAAGCGTCCTCTTGCAGTCTGCTTACATGCTGTATGGCTTTAGGAGTGACATTCAGATTCTGAAATCCCGCTTGCCTGTATATGGAGAAGTTGGAGAAActataattttatgtatttctatatttaccctatatattaaaatcactTGAAGCACTCTAACACAATATTCTGTATGTATTTTAAGCAGCCATGCATGGTCACTACCGTGACCTAGATAACACACAAAATTCGGACAAAATTATACctcaatatataatttaatgatgATAAAGTTCCCAAGAttgtgcaatgtttttttatttttttttttatcatatttgtaTTAGATCCCTGCATTGTTCTAGAGGTGACTCTAGTTCTCAATTGAACATACGAGAGAAGCATTACTTCTAATTTGGCTAAATAAACcccattaaaatgtacatattttaatattttgttttgtgcctttttaaatgttttttttaaaggtgcaaATAGTCAGAAACAAAAGTctaaaaagaagacaaaatgtTACTTTTCCGGGCCGCATTTTATGTGTACGGTTCTGATTACCTGATTCCTGATTACCATTCCTGATTACTGATTAAAATTCCAGATAACCAGACAATGATTCAtcttttataaatcattaaaataataatgtctgGTATACATGGAAACTGTGGAGTacgcatatatttttaatgacctTTCTAATGACCTTTCCTCACACTGCTGTTCAGTTTGGTGTTAACATCTAATTACATACTTGTCAAAGACACGGAAGCATTCGGATAGTTCCTCCTCAGTCTTGCCGGCTTGGTCTTCTTTTAGCTGCTGCACCATCATGACCAAGAACTCCTCAAAGTCAATAGTGCCACTGCCTGAGAATGCAAAATTGAGATGTGATGGGACAGACTGAAGTGCAGACAGGATTTGTATTTGTATCCAGATCTGAATGCTTCAGATTCCAATTCTGACCCAACAAATTTTGCTTTATTCCTTAAACATTTCAATCTTACCAAATTAAATTACTCCCCATGCAATATATTGGAAAGCCCTTGGATAATCAAGGAATTCAAATCCATCCTTGATTCCATGAGTAGATATAAAGTCCCTGGGTTAAATAGGATTCCCTCAGAAATACTGAAAACACTGTGGGACATTATAGCAGCCAAGATTATATATAATGCTCCTAATTTCGCGTCAGAAACACAGGGGACTAAACCACAGCTTTAATAGCTTTGCTGCTGAAGAAAGGGAAGTGATTTACTTATCTTCTATCCACAGATTCAAAGCTGATGACAAAAGTATAGGAGACTACACTGACTAAGATCAATCTAATTTAAATCAGACAATGCCCAACAATAGTTtcaataaattgaattaaaaatttgGTCCAATTATATGCCATTCTGCCAAAACCTGGAAAGCAGCAGAAAGGTTTATGAGAGCTTCAGCTTCAGACTCCCATATGGCATTATAATAATCTTAGCACTTGTAACAAACCATTCGTTTCCAAAAGTTCTTTCAGATTCTAAAGGATAAATTATCTCTCCCAGGATTATCTCTCTCCGAGGCAGAAGACCTTTGTTGGATGCCCCTGGTCTTCAAGCTCCGCTGTAAATAAAGTCCGACCAAACTTACCATCTTCATCTACTTCTTCAATGATAGCATCCAGTTCCTCTCTGGATGGATTCTGACCCAGCATCCTCATGACGGTACCCAACTCCTTGGTGCTGATATCACCGCCACCATCAGTGTCGAACATGTCGAAGGCAGCCTTGAACTCTTTGATTTGagatgaaaaaaaggaaaaaataaattagaaaaatagaATGTGAAAAGCTG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232457 lncRNA downstream 203536 11793603 ~ 11851710 (-) True G156972
TU232440 lncRNA downstream 204664 11763709 ~ 11850582 (-) False atp2b3b
TU232453 lncRNA downstream 272880 11781567 ~ 11782366 (-) True G156971
TU232436 lncRNA downstream 292223 11762440 ~ 11763023 (-) True G156962
TU232213 lncRNA downstream 515201 11539623 ~ 11540045 (-) True G156812
TU232458 lncRNA upstream 79 12061447 ~ 12064715 (-) True G156973
TU232460 lncRNA upstream 79 12061447 ~ 12064715 (-) False G156973
TU232520 lncRNA upstream 37599 12098967 ~ 12099726 (-) True G157012
TU232550 lncRNA upstream 89992 12151360 ~ 12156300 (-) True G157035
TU232551 lncRNA upstream 96034 12157402 ~ 12158314 (-) True G157036
XM_043225154.1 mRNA downstream 6455 12047116 ~ 12048791 (-) True LOC122329006
XM_043224192.1 mRNA downstream 9941 12038033 ~ 12045305 (-) True si:rp71-17i16.5
XM_043224193.1 mRNA downstream 22500 12030850 ~ 12032746 (-) True si:rp71-17i16.6
XM_043224186.1 mRNA downstream 25016 11995970 ~ 12030230 (-) False lamb2l
XM_043224187.1 mRNA downstream 30135 11995970 ~ 12025111 (-) True lamb2l
XM_043225159.1 mRNA upstream 3979 12065347 ~ 12066172 (-) True taf13
XM_043225497.1 mRNA upstream 142965 12204333 ~ 12212104 (-) True znf362b
XM_043224674.1 mRNA upstream 323475 12384843 ~ 12440260 (-) True megf6a
XM_043224675.1 mRNA upstream 323475 12384843 ~ 12418303 (-) False megf6a
XM_043225274.1 mRNA upstream 455554 12516922 ~ 12519193 (-) True her12
TU232479 other downstream 130596 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 253614 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232410 other downstream 308626 11741400 ~ 11746620 (-) False LOC122328546
TU232414 other downstream 308626 11741400 ~ 11746620 (-) True LOC122328546
TU232418 other downstream 308626 11744119 ~ 11746620 (-) False LOC122328546
TU233029 other upstream 1079710 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1218888 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2265598 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2519726 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 3286049 15347417 ~ 15474377 (-) False magi3a

Expression Profile