RNA id: TU232604


Basic Information

Item Value
RNA id TU232604
length 2565
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC122328708
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12246193 ~ 12251982 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCAAGTTGACCGGCAGAATATCACTACACGTgcgttttgtttaatttatcttCGTGAAATTTTTAAGACGGTACTCCGGGATTACTCGCAGCACTCGTCTGAGTCGCACTGGATATAAGAGGGCCCCTGTAAACACAGCCCAGCGAGACATTTAACCCGAAAGACGCCTGGCTCCTGTTCGCCATGTCTGTCTCCCAAGACTCCCAATCCTACACAGCTGCTGTTTTCCTCTCAGTGCCACCCACCTGCGGGAGACCAGGTGGTTCCGTCCTTACAGAAACTGTCTGTTTATGAACACATACCCCCTTGTTCGCCCAGGAGAACAACCAAGCCCCTCCCACCCCTCCCGGACATAGGCGATTTATCCTCTGATGAAACCGAAGATGACGAGGTGGAGTTTTTCTCCAGCACCTCTGAGACCCAATATCTGGTGCCTAAAACCCCTTCCTTCCAGTACGGCTTGTCGGGGAGGCGCAGTTTTCCGGGAAACGGTCAGGTAAACTTTGCGTATCACGAAGGACATCAATGGGAGCACACAGTTACACATAACCAAGACGGACCCAAACGCCGGCTACACCGCTCATATTCTGGCCCCGCCGGATCCTTTAAAGCCGCCAACTTCAGACCGACTGGCCTTCATCATTCTTCCCACAGCCACCCGCAGGAGAAACCCGAAGTCCCGCCCCGCGTCCCAATCCGTTCTCGCTTCAGTGAAAGCGCGGACGACAGGCGGCTGTCAATCGATGACTGTGATGCAGACAAACCTCCTAAAGTGCCGCCAAGGGAGCCCATTCCTCAGGTCATACCGAGAGCCGTCAGTCCAAAAAGCCTCCCAATTTACATCAATGGGGTGATGCCTCCTACTCAGAGCTTTGCTCCTTATCCGGAGTATGTCAGTAAGGCTCAACACAAGCAGAGCTGCGAGGGCCCGCCGGCTCCCCGGAGCCCCTGTATTCTGCCCATCATGGAAGATGGAAAGAAAGTCAGCAGCACCCATTACTTCCTCCTCCCTCATCGGCCTGGCTACTTGGACAAATTTGAGAGGTTTTTCAAAGAATCCGACTCATAGTGATTTGAGTGGTTGgttgttttgcttgtttaaaGTTCGACTGAACTGATTCTTCAGTGTTACGCATTTACTGGTCTGTTTAAGAATTGGATAATTATGTATTTGGActtcacacaaagaaaaacaaaatgaattggTTTACCACTGCTGGAAACTAAAGGGCGGCTCTGAAAGTGCCCTTTGTTGGGAGGGATGCATGATTAATCAAAGTGAAACTGAAGTTGGGATTTTGACTTGAACAAAAGGTCTCACAGTCTCCCTGTGTTTCTCTGCCAAATTAAAGTCTATGGTAGATCTATGATCCGTGGTTAAAGAAGAAATGGAGGCATAAATGAAGCCATAAATATGTACGGTTCTGTAAAATAAGACTattagtaataaatacatttacattgtattacattacattgaACTATTACAATAGCAATGCTTATTTtgcttgtattattattattgtaataagcACATCAAacctggaaaaatattttaaattgcattttaaatcacaattggGTTGTTTCCTATGAATCGTGCCACCCTATTTATTGATGTCCATGTTCTTTGTTATACTATTTCCTTGCTGTATTATTGAATTAGTGTACAGTATCCTTGAATGAAGGAATAGGATTAACTGTTACACTGTTAACACTGTGTAACCAGAGTATAAGCTGGTAATATCTTTTTCTCTGTAACGTGGAATGGTAAAGTtgcatgtattgttttttatttgttttttcccctttaaatTGTACACCAACAGTACAAATTTATATGttgcttaaaaatgaaaagattagTATTAGCAATAGCACTGAATTCCTGGTAATCAAGAGCTGCCAACTGTTTTTATTAGTCGAGGGCTAGATATGATTTACACACGTGAGAAGAAGGATCAAAAAGACTCTGTACTAGTGTAGTGGCATAAATGGAAACATCAGGACACAGGGGTTAGTATTCCAACTAGTGTCCATTCAGAcggaattaaatacatttatcatttgATTTTAAGAGGATGATGCTTATAGTACAAACAGATTTACTTGTgctgaagctttttttttttttttttttttttgggtcacGTCTGTTACAAGGGTCAACATGCCACTGCCCTGCTGTTTGGTGTCAAAATGCAGGACACTGTAAATGggtagtctttttttatttataatactgtTTACCATGAATATATTGAAGCCCTTAACTAGTCCTGGCCTTGTTTCATGTGTTTCTTACCAAACGTTGACCAGacttgttgctgtttttattgtgattaGACCTTTTATAATCTTGACATTATCAGACCAGTAACTGTTTACGTTTTCAGCTACGTATGTTTTGTCCGTACAACAAAATGACTTGGTTATTTTCTGTGTGAAGGCTAACGTTAACTGACTTTGTTTCATCTGCTGAGGAAACATGCACTtctaaaatgtacagtattggTGTAGTTTTTCACACCAgactatttaaataaagtaacttATTTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232614 lncRNA upstream 116 12245874 ~ 12246101 (+) True G157081
TU232612 lncRNA upstream 4816 12239849 ~ 12241401 (+) True G157079
TU232392 lncRNA upstream 40822 12204256 ~ 12205395 (+) True G156931
TU232390 lncRNA upstream 40822 12204344 ~ 12205395 (+) False G156931
TU232394 lncRNA upstream 71302 12174530 ~ 12174915 (+) True G156933
TU232617 lncRNA downstream 101112 12353090 ~ 12386381 (+) False G157084
TU232620 lncRNA downstream 109495 12361473 ~ 12386381 (+) True G157084
TU232621 lncRNA downstream 109717 12361695 ~ 12386381 (+) False G157084
TU232866 lncRNA downstream 477066 12729044 ~ 12787715 (+) True G157265
TU232925 lncRNA downstream 601263 12853241 ~ 12853832 (+) True G157294
XM_043225453.1 mRNA upstream 10240 12229968 ~ 12235977 (+) False zgc:154075
XM_043224563.1 mRNA downstream 747 12252725 ~ 12311254 (+) False pax7b
XM_043224558.1 mRNA downstream 9517 12261495 ~ 12311254 (+) True pax7b
XM_043224559.1 mRNA downstream 9517 12261495 ~ 12311254 (+) False pax7b
XM_043224560.1 mRNA downstream 9518 12261496 ~ 12311254 (+) False pax7b
XM_043224562.1 mRNA downstream 9518 12261496 ~ 12311254 (+) False pax7b
unassigned_transcript_2622 other upstream 727681 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 730346 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 732371 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 733519 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1069184 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1802386 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1804707 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2047723 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2432012 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2460169 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile