RNA id: TU232620


Basic Information

Item Value
RNA id TU232620
length 2072
lncRNA type sense_over
GC content 0.34
exon number 2
gene id G157084
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12353090 ~ 12386381 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatttttccaccCATTTGTTATAATTTGGGCTATTCTCTGTAAAATTCAGGTATGCAAACCCCAAAAACTGCAGCAGAGCTCAGTGGGTTAAGAAGCGAGTGACCTAGTAGAGGGGGCGGTGGTGGAGTTGAGCGGGGTCTGTGTGCTCGTTTGTCGTCCCTTCGTTGAGCTGAAACCAAAGACATTTAGCTCCATCCAAACCACGTACAGGTCGCTTGATCACGTGACGTAtcgtttaaaatgcaatttgatAGGCTAACCTACTCTTCATACGTATTCGGTGTTTTTGccttaatgtgtattttaagtcCTTTTTTTGATGTGTGTGGAAATctgttactatttatttatctgtattaATGCATGTTAAGTTACCCGAATCATTTTGAGCACTGGTCTCTGTTTTTCAGGCGGCCAGTATTTTAACAAGAGAAGGCTAAACGATTTTTTCAAAGCATTAcggaaggttttttttatttgtagttttaccTTGTGTTAAATTTTTGTTCTCCTcctgtacatttacattttttgtccaaTGGCGCCCTCTACTGGCTGGAAATACATCTCTACCCGTTAGCCTACTCGTtagaaaaaggttttaaaaattaactattgcttttgattaattGATAGGTAATAATATTTGCAAGGCAGTGGAtcatttttgcatgtgttttccACATTATTCCAGATGTGTCTATAAAACTGGTAAATCGTATCTTAGACCCTTTTAAACGAAAAAGACAGCAATTTAGCGCTATCCTAATCACTGGCTAAGAAATACTAAATTATATGCCTTATTTAGTACTCATGCAAAATATTCAGTGCTGACAAACATTTGTTTAGCATGTTTCATCTGTACCAATAGAATACTGTACGCTACGCATTATGGCATTTTAAAACCATCAGTGGGGAATGATAAGCATAAGCTAAGGTTAACAGAGACTTTATGGAGTAATTTATATGTTATCAtacttaaactttaaaataaatgccaaaatacatttctaacacATCAAGGCCGTTCAAAATATTCTGACACTCGTTCCAAAACGAATGGactttttactgaatttaatcTTCAAGGAGTCGCAATACAGTTGGCTGCATGTACATAGTATCGAATTTTAATAATGGCctactattttaattattttagcgTGCAACAATGCTTATGCTTATCTGGGTATGAACGTTTTGACCTGCAGTTGGAATGTAATGCAGTTTATATGAGTTTTGATTGTTGCCTGAGCTACATCGAGTCTTAGGAGACtgttaaacaagaaaaaaagtggaGCGATTATTAATATCTGTAAGGCTTTTTCAAGTAGCACTTTAACCAAAGACCGCAGGCTTTGATGGACGTGGAAGACGTTGCTTCGGTTGCCCTTAGCTGAGGGACATTGTACTGTCATTTGTATGTTGAGTCAGGCTGCATCCATCATATGAGCCTTTAGTGGTTTGCTTTCGCTCAGGAAGCCATAATATGTTGTCAGTAATTAAATGGTCAAATTGAGCCAGTTTAGTCATGTGGAGGATAAATAGCACTGAATGAGAAAATGTTGGTgtacagtttgttttttgttttgtttttttgcaagaatACAAGGTTGTTGTCGAATGAGCCCAAGTTGAGTACTTTGCTGTAAAATTAGTCCAGTATTGTCAACATAACTGTATGTACAGGAAATCTGATGTTTTGAAGCTGATTTgataagatttttgttttggtatGACCTACAGTATAATTATGACATTACATGTTAACTGTAATATGACCATTACTGTTACTGATATGCATTGAGTTATGGTGATTTCTGTAGATACATAACGGAATGGTTTAATAACATgtatataatctaaatatatacatatactatacTGGTCTTAATGACCATTATCACATTtgccttcatttattttttcattggcAATTATTGCTTACGACATTGCGcttgaagaaaaatatatgtacagcttcaaataactgaaaataaattattctaaaattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232604 lncRNA upstream 109495 12246217 ~ 12251978 (+) False LOC122328708
TU232614 lncRNA upstream 115372 12245874 ~ 12246101 (+) True G157081
TU232612 lncRNA upstream 120072 12239849 ~ 12241401 (+) True G157079
TU232392 lncRNA upstream 156078 12204256 ~ 12205395 (+) True G156931
TU232866 lncRNA downstream 342663 12729044 ~ 12787715 (+) True G157265
TU232925 lncRNA downstream 466860 12853241 ~ 12853832 (+) True G157294
TU232954 lncRNA downstream 603420 12989801 ~ 13040412 (+) True G157317
TU232968 lncRNA downstream 720079 13106460 ~ 13106957 (+) True G157326
TU232971 lncRNA downstream 728577 13114958 ~ 13115174 (+) True G157329
XM_043224563.1 mRNA upstream 50219 12252725 ~ 12311254 (+) False pax7b
XM_043225281.1 mRNA downstream 54675 12441056 ~ 12449532 (+) True emc1
XM_043225282.1 mRNA downstream 54688 12441069 ~ 12449532 (+) False emc1
XM_043225176.1 mRNA downstream 63889 12450270 ~ 12490854 (+) True ubr4
XM_043225181.1 mRNA downstream 63889 12450270 ~ 12490854 (+) False ubr4
XM_043225182.1 mRNA downstream 63889 12450270 ~ 12490854 (+) False ubr4
unassigned_transcript_2622 other upstream 842937 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 845602 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 847627 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 848775 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1184440 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1667983 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1670304 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 1913320 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2297609 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2325766 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile