RNA id: TU232662


Basic Information

Item Value
RNA id TU232662
length 3245
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G157104
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12246217 ~ 12251981 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTTTATAAATaagttactttatttaaatagtcTGGTGTGAAAAACTACAccaatactgtacattttagaAGTGCATGTTTCCTCAGCAGATGAAACAAAGTCAGTTAACGTTAGCCTTCACACAGAAAATAACCAAGTCATTTTGTTGTACGGACAAAACATACGTAGCTGAAAACGTAAACAGTTACTGGTCTGATAATGTCAAGATTATAAAAGGTCtaatcacaataaaaacagcaacaagtCTGGTCAACGTTTGGTAAGAAACACATGAAACAAGGCCAGGACTAGTTAAGGGCTTCAATATATTCATGGTAAacagtattataaataaaaaaagactaccCATTTACAGTGTCCTGCATTTTGACACCAAACAGCAGGGCAGTGGCATGTTGACCCTTGTAACAGACgtgacccaaaaaaaaaaaaaaaaaaaaaaagcttcagcACAAGTAAATCTGTTTGTACTATAAGCATCATCCTCTTAAAATcaaatgataaatgtatttaattccgTCTGAATGGACACTAGTTGGAATACTAACCCCTGTGTCCTGATGTTTCCATTTATGCCACTACACTAGTACAGAGTCTTTTTGATCCTTCTTCTCACGTGTGTAAATCATATCTAGCCCTCGACTAATAAAAACAGTTGGCAGCTCTTGATTACCAGGAATTCAGTGCTATTGCTAATActaatcttttcatttttaagcaaCATATAAATTTGTACTGTTGGTGTACAatttaaaggggaaaaaacaaataaaaaacaatacatgcaACTTTACCATTCCACGTTACAGAGAAAAAGATATTACCAGCTTATACTCTGGTTACACAGTGTTAACAGTGTAACAGTTAATCCTATTCCTTCATTCAAGGATACTGTACACTAATTCAATAATACAGCAAGGAAATAGTATAACAAAGAACATGGACATCAATAAATAGGGTGGCACGATTCATAGGAAACAACccaattgtgatttaaaatgcaatttaaaatatttttccaggtTTGATGTgcttattacaataataataatacaagcaAAATAAGCATTGCTATTGTAATAGTtcaatgtaatgtaatacaatgtaaatgtatttattactaatAGTCTTATTTTACAGAACCGTACATATTTATGGCTTCATTTATGCCTCCATTTCTTCTTTAACCACGGATCATAGATCTACCATAGACTTTAATTTGGCAGAGAAACACAGGGAGACTGTGAGACCTTTTGTTCAAGTCAAAATCCCAACTTCAGTTTCACTTTGATTAATCATGCATCCCTCCCAACAAAGGGCACTTTCAGAGCCGCCCTTTAGTTTCCAGCAGTGGTAAAccaattcattttgtttttctttgtgtgaagTCCAAATACATAATTATCCAATTCTTAAACAGACCAGTAAATGCGTAACACTGAAGAATCAGTTCAGTCGAACtttaaacaagcaaaacaacCAACCACTCAAATCACTATGAGTCGGATTCTTTGAAAAACCTCTCAAATTTGTCCAAGTAGCCAGGCCGATGAGGGAGGAGGAAGTAATGGGTGCTGCTGACTTTCTTTCCATCTTCCATGATGGGCAGAATACAGGGGCTCCGGGGAGCCGGCGGGCCCTCGCAGCTCTGCTTGTGTTGAGCCTTACTGACATACTCCGGATAAGGAGCAAAGCTCTGAGTAGGAGGCATCACCCCATTGATGTAAATTGGGAGGCTTTTTGGACTGACGGCTCTCGGTATGACCTGAGGAATGGGCTCCCTTGGCGGCACTTTAGGAGGTTTGTCTGCATCACAGTCATCGATTGACAGCCGCCTGTCGTCCGCGCTTTCACTGAAGCGAGAACGGATTGGGACGCGGGGCGGGACTTCGGGTTTCTCCTGCGGGTGGCTGTGGGAAGAATGATGAAGGCCAGTCGGTCTGAAGTTGGCGGCTTTAAAGGATCCGGCGGGGCCAGAATATGAGCGGTGTAGCCGGCGTTTGGGTCCGTCTTGGTTATGTGTAACTGTGTGCTCCCATTGATGTCCTTCGTGATACGCAAAGTTTACCTGACCGTTTCCCGGAAAACTGCGCCTCCCCGACAAGCCGTACTGGAAGGAAGGGGTTTTAGGCACCAGATATTGGGTCTCAGAGGTGCTGGAGAAAAACTCCACCTCGTCATCTTCGGTTTCATCAGAGGATAAATCGCCTATGTCCGGGAGGGGTGGGAGGGGCTTGGTTGTTCTCCTGGGCGAACAAGGGGGTATGTGTTCATAAACAGACAGTTTCTGTAAGGACGGAACCACCTGGTCTCCCGCAGGTGGGTGGCACTGAGAGGAAAACAGCAGCTGTGTAGGATTGGGAGTCTTGGGAGACAGACATGGCGAACAGGAGCCAGGCGTCTTTCCTGTGAAGTAAAAcacagaggaaaaaataaataaattaaaaatgaggaTTTGAGCGCAATAACacctcatttagttttttttccctaagGGTGCATCTCTTAAAACAGCGTTAGCCTCAACACGGCACGTTTATCAAAGGATTCACTTATCAGCAGAGCAAGTGACAATCGTACAACTTCCTATAACCTTCTGTGCTTCCTGAGAAACATCCGCAGCAGGCTTCGAGAACAGAGGGTGACCAGATTGTGATATGGTTgctaaaaatttaaaatcaagCACTCGCTTACTTTCAAAGCCCACGTTTGCAGAGTTTTGCTGATACATTCTCAAGCTGTGGTCCATGGACTCCGAACCAAATCCGAAAAACAGCCTACAACAGACAAAAATGGAAGGTGTCAAGTCTGGTGATCGGAGAAGTAGATCTCTCAATATGTAACGCAGCCAGCTGAGCTGAAGACTGCAGCTCACACTCACTTATCCATGGTGTCGTGGTCATGGTGCTGATCCCAGTACGGCTGGGCTGAGGCCATAATGTAAAAGAGAGTGGGGACTAGTCCAGGCCTGTGGGGTTCTCCATCTTTCTTGAACCTGCAGAACTCATAATCCAGGAATGGGTAACCAAGTCAGGCCTTTTGCTCCACTTTTCCAACagcaatgtggaaaaaaaaaaaaaaACGGGTTAAATGTCTCGCTGGGCTGTGTTTACAGGGGCCCTCTTATATCCAGTGCGACTCAGACGAGTGCTGCGAGTAATCCCGGAGTACCGTCTTAAAAATTTCACGaagataaattaaacaaaacgcACGTGTAGTGATATTCTGCCGGTCAACTTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232657 lncRNA downstream 2536 12243091 ~ 12243681 (-) True G157102
TU232655 lncRNA downstream 4801 12239934 ~ 12241416 (-) True G157100
TU232534 lncRNA downstream 72030 12173386 ~ 12174187 (-) True G157022
TU232551 lncRNA downstream 87903 12157402 ~ 12158314 (-) True G157036
TU232550 lncRNA downstream 89917 12151360 ~ 12156300 (-) True G157035
TU232665 lncRNA upstream 750 12252731 ~ 12252936 (-) True G157106
TU232812 lncRNA upstream 272498 12524479 ~ 12529493 (-) False G157222
TU232815 lncRNA upstream 272498 12524479 ~ 12529493 (-) True G157222
TU232817 lncRNA upstream 281777 12533758 ~ 12533979 (-) True G157224
TU232855 lncRNA upstream 367038 12619019 ~ 12620057 (-) True G157255
XM_043225497.1 mRNA downstream 34113 12204333 ~ 12212104 (-) True znf362b
XM_043225159.1 mRNA downstream 180045 12065347 ~ 12066172 (-) True taf13
XM_043225154.1 mRNA downstream 197426 12047116 ~ 12048791 (-) True LOC122329006
XM_043224192.1 mRNA downstream 200912 12038033 ~ 12045305 (-) True si:rp71-17i16.5
XM_043224193.1 mRNA downstream 213471 12030850 ~ 12032746 (-) True si:rp71-17i16.6
XM_043224674.1 mRNA upstream 132862 12384843 ~ 12440260 (-) True megf6a
XM_043224675.1 mRNA upstream 132862 12384843 ~ 12418303 (-) False megf6a
XM_043225274.1 mRNA upstream 264941 12516922 ~ 12519193 (-) True her12
XM_043224001.1 mRNA upstream 269840 12521821 ~ 12531561 (-) True LOC122328351
XM_043225400.1 mRNA upstream 294090 12546071 ~ 12553730 (-) False rnf207b
TU232479 other downstream 321567 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 444585 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 499597 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 500822 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 503414 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 889097 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 1028275 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 2074985 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 2329113 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 3095436 15347417 ~ 15474377 (-) False magi3a

Expression Profile