RNA id: TU232954


Basic Information

Item Value
RNA id TU232954
length 2477
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G157317
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12989801 ~ 13040412 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatatatatatatatatatatGGTCATAATTAACTACAGAGCCCAAATTTTAAGTAGATGTCATAACTTGCTTCATAAcagataattaattaattaaataatttaaacttcACTGACAGGTATAGTAAAATatgaccatatatatatatatatatatatacacaaagtgCAAATATCCTGCCTTATAAATAGCTCTGCTTACCAACATGTGATTGGGCtagtcaatattttattttatacatatcttttttcttcctttttaaatttcagatCACATCAGAAAAGCACTTATTTTCCTAATGAAGTTAATTCCTTCATTTATCAAAATGAAAGAATTAAGTACCACATAAGTTTAGGGTAGGTATAAGGAGGGCTTTTGTCCCAATAAGGTGGCACCTATTtagttattattgcattttactacttttttataatgtactacaatacTAATACTGAGGTGCAAATAATTGCCACTatttgcaataagtagtataaatggcagaaaatcttttttttttttaacatagtgtaaatagaatctaTAGCTATTTGCGCTTAGTGTAAATAGTATATATTACAAACGGCTGCTGCCTTAGGCTGTATAAAACTGGAAGTACCCTAAGAACTTGTGCAATGGTTAAAACAATGCTGTACTTGTTCAGTATGTGTACCAAACTGAAAGACCCAAATAAGTGCACCGTTACAGCCCTAATATATTATAGCTCGTATTTATTGGTGAGAAACTGGAGGGTGCTGTTActcttaaataatttatttatctgcCATTATCACTTGTGCATGGAGAAATGGGGCATTTTAATGAGTACAACTCaaagaaaatattcatatttgattaGCATCAAAACATGACCGTTTCGTGAAGTGTGACAGATGCCCTCTGAATATATTAGATTAGATATTGCAGATGCCTTACCTTACCCTCAAACAAATGATACGTGCATCCATGTCAGTGTTACAACAACAGTGAGTTACCGTACTAATTCAGCTTAGTTTCCTGACCGGCTAACCAAGCTGTACTCACTATATGTAAGTCATGGTTTATGCTCAGCTTTGTTTCACCAATTGGACATGTCAGTTGTTTGCCACATAACCAGCCCGTGATAAATCCTTGAGTCTTGGGTCTTTATGATGgctcttctctttgtttttggTAAAGGAAACTGTATAAAAATCCCTAGTGGAGATACTTTCTTTATGTTGACTCGATTCAAACTGGCTCTTCTTTGCTTAGTGTTTGAACGTACAGATGGTTTGATGTCTGAACTGCGTGCCAAGGTGACAGTCCTCTTTTAAACACTCGGTCTGGACCTTTGAGTTAAGACAAATGTGCTGTTGCTTATCTATGAACCAATCATTAATGCCAAAAATAAGTCAATGTGATGTTTGCTCTTTCTGTTAAAGGCAAAAAGCATTGAATGGAGCTTAAATATGGCAGAGTGGTTTGGGGTTGCCTTACTCTAAGTGTCAAAATATATGAAGGGGAAAGCTTAGCAgaattttttgtaatgtatttatgataAATGATCGGCCTTACTGTCTTTATACCGTCTTTTCCTgcacctttaaaatgttatgtagtTCTCATAGCTGatccatgtttgtttttatacgTTACGATTGATCCGTCCTGATGACACTGGCTGTGTCCGAcacctgaaaaatgttttgcaggatcacgtgacactgtaGATCGGAATAGATCattcagaaaattcagctttgccgtcacgggaataaattatgctttagaaaatattcaaatagaataTCGTTAAATCTTTTTCACAATGTTATCGTTTTTGCTGTATTGTTGTCacataaatgtagccttggtgagcttaagagatttatttgaaaagcattAAGTAATCGTGTCTGTCTGAAAGCAGTTTTGTTATGCCTGTGAATAATTAGACTGATTAGTTGCTTGAGGTTTTGGACACAGCCATTGTGAGATGTTGCGTTAAAAAGCAAATGATATGCGTTTGTTTggtttatatttctgtttcataTCAGACTAAAATGCTCTACATCATCTCTAAAACTTCAAAGAATTACTAACACCATGACTACAACCTCTAGAGATACTGGTATCAGTTAAAATGCTCAAATATGTTGGAAATATGTTTTTAGTCCGCTTTTGATTGCGCTGCGCGGGGCTTCTGTGCCCTCTTGTGGTGAATCATGATTTTAGCACCGTTTATTTGCTGCATCCATGTACATAACTGTAATTGCTGTTCCTGTTTAGAAGTCGAATTTGTCTGGAGAGTAAAAGATGCAGCACAAAATCCATGCTGATGACAGGGTATGAATTTTTAGACATTGTTATGCTTTTCTTTTAGCTGCTGCTTCTGTGACCTTTTCCTGTGCAATCATCAATGTAAATACTGCTTTTTTGTACATACTGCCCAGAAAATCTGAAACAAATAAACTTGAGTGTGATATTTCATTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232925 lncRNA upstream 135969 12853241 ~ 12853832 (+) True G157294
TU232866 lncRNA upstream 202086 12729044 ~ 12787715 (+) True G157265
TU232617 lncRNA upstream 603420 12353090 ~ 12386381 (+) False G157084
TU232620 lncRNA upstream 603420 12361473 ~ 12386381 (+) True G157084
TU232621 lncRNA upstream 603420 12361695 ~ 12386381 (+) False G157084
TU232968 lncRNA downstream 66048 13106460 ~ 13106957 (+) True G157326
TU232971 lncRNA downstream 74546 13114958 ~ 13115174 (+) True G157329
TU233085 lncRNA downstream 371258 13411670 ~ 13494477 (+) False G157408
TU233091 lncRNA downstream 397863 13438275 ~ 13441951 (+) True G157410
TU233089 lncRNA downstream 453174 13493586 ~ 13495376 (+) True G157408
XM_043225480.1 mRNA upstream 36786 12944258 ~ 12953015 (+) True LOC122329270
XM_043224600.1 mRNA upstream 219871 12734989 ~ 12769930 (+) False eif4g3b
XM_043224011.1 mRNA downstream 68642 13109054 ~ 13113029 (+) True gpr157
XM_043225301.1 mRNA downstream 76581 13116993 ~ 13123560 (+) True LOC122329098
XM_043225051.1 mRNA downstream 91605 13132017 ~ 13141968 (+) True eno1a
XM_043225050.1 mRNA downstream 91605 13132017 ~ 13141968 (+) False eno1a
XM_043224413.1 mRNA downstream 107293 13147705 ~ 13284874 (+) False rerea
unassigned_transcript_2622 other upstream 1471265 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 1473930 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 1475955 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 1477103 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 1812768 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1013952 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1016273 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 1259289 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 1643578 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 1671735 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile