RNA id: TU233018


Basic Information

Item Value
RNA id TU233018
length 222
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G157360
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13115910 ~ 13116131 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTAAAGGAAAAACAATGTATTCAGAAATAAAAGGATTTCAGTAACACTCTGAAAAGGAATATTCATATACAATTTTCTTAGCTCCACTGCTGCTGAGTTAATAAAATGAGCATAAAGgtatgcacgcacgcacacacgcacacacacacacacacacacacacacacacacacacacagacgaggTATTCTTCTTGACTAAAGAAGCCAGATCTCTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233005 lncRNA downstream 8717 13106453 ~ 13107193 (-) False G157355
TU233004 lncRNA downstream 8990 13105761 ~ 13106920 (-) True G157355
TU233007 lncRNA downstream 12359 13103111 ~ 13103551 (-) True G157357
TU233002 lncRNA downstream 52006 13063654 ~ 13063904 (-) True G157353
TU232998 lncRNA downstream 75513 13029866 ~ 13040397 (-) True G157349
TU233019 lncRNA upstream 1249 13117380 ~ 13118168 (-) True G157361
TU233021 lncRNA upstream 3052 13119183 ~ 13119553 (-) True G157363
TU233022 lncRNA upstream 3867 13119998 ~ 13120516 (-) True G157364
TU233023 lncRNA upstream 5682 13121813 ~ 13122026 (-) True G157365
TU233620 lncRNA upstream 317624 13433755 ~ 13435861 (-) True G157765
XM_043225087.1 mRNA downstream 35686 13067327 ~ 13080224 (-) True spsb1
XM_043224194.1 mRNA downstream 175025 12936321 ~ 12940885 (-) False LOC122328487
XM_043224195.1 mRNA downstream 175025 12936321 ~ 12940885 (-) True LOC122328487
XM_043224260.1 mRNA downstream 185097 12911070 ~ 12930813 (-) True LOC122328520
XM_043225364.1 mRNA downstream 305341 12771790 ~ 12810569 (-) True phc2a
XM_043225300.1 mRNA upstream 7317 13123448 ~ 13128638 (-) False ca6
XM_043225299.1 mRNA upstream 7317 13123448 ~ 13128638 (-) True ca6
XM_043224557.1 mRNA upstream 260313 13376444 ~ 13401670 (-) True noc2l
XM_043224798.1 mRNA upstream 320411 13436542 ~ 13442457 (-) True LOC122328822
XM_043225556.1 mRNA upstream 377450 13493581 ~ 13495390 (-) True her9
TU232479 other downstream 1191260 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 1314278 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 1369290 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 1370515 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 1373107 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 24947 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 164125 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 1210835 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 1464963 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 2231286 15347417 ~ 15474377 (-) False magi3a

Expression Profile