RNA id: TU233022


Basic Information

Item Value
RNA id TU233022
length 519
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G157364
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13119998 ~ 13120516 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGTTAAAGTTAGGATTCAGTtcaccaaaacataaaaactgtttaacaCTACACTTacgttttcataaaaaatgcattaaatagaatcatctgatgttttaaagcGGTGCTTACGGCATTGACTCCTGACAGTTGTTGGCCCATGTTCATGAAGATTACAGACAGCAGCTGCCAGCGCAGTGAGCGGAAGGTGAAGAGGTTGAGCACAGAGAGTTGACCTTCTGCTCGCTCCGACTGTTCCTCCACACGCATCTCACACAGCTCCTCATCCACATCCTCACAGCCACGCAGCTTCTGCAACCCTAAAACACATCAGAgacttcatttaataaatagctCCCATGTTGACATTCAGATCAACGGCACTATAATGAGTGTGATAgtgctcacccaaaaatgaaatatcctcctttgtgtttggATGAACAAGAAATTCATAGAAATTCAAGTAAGCAAGACACTAATTTTGAGTAGCTGACATTTCAGACACAATATTGATGTTATGGTTGCTTTTTTG

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0070279 vitamin B6 binding molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
ko00450 Selenocompound metabolism
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233021 lncRNA downstream 445 13119183 ~ 13119553 (-) True G157363
TU233019 lncRNA downstream 1830 13117380 ~ 13118168 (-) True G157361
TU233018 lncRNA downstream 3867 13115910 ~ 13116131 (-) True G157360
TU233005 lncRNA downstream 12805 13106453 ~ 13107193 (-) False G157355
TU233004 lncRNA downstream 13078 13105761 ~ 13106920 (-) True G157355
TU233023 lncRNA upstream 1297 13121813 ~ 13122026 (-) True G157365
TU233620 lncRNA upstream 313239 13433755 ~ 13435861 (-) True G157765
TU233665 lncRNA upstream 621741 13742257 ~ 13747171 (-) True G157799
TU233679 lncRNA upstream 652259 13772775 ~ 13773308 (-) True G157813
TU233703 lncRNA upstream 703477 13823993 ~ 13825589 (-) True G157826
XM_043225087.1 mRNA downstream 39774 13067327 ~ 13080224 (-) True spsb1
XM_043224194.1 mRNA downstream 179113 12936321 ~ 12940885 (-) False LOC122328487
XM_043224195.1 mRNA downstream 179113 12936321 ~ 12940885 (-) True LOC122328487
XM_043224260.1 mRNA downstream 189185 12911070 ~ 12930813 (-) True LOC122328520
XM_043225364.1 mRNA downstream 309429 12771790 ~ 12810569 (-) True phc2a
XM_043225300.1 mRNA upstream 2932 13123448 ~ 13128638 (-) False ca6
XM_043225299.1 mRNA upstream 2932 13123448 ~ 13128638 (-) True ca6
XM_043224557.1 mRNA upstream 255928 13376444 ~ 13401670 (-) True noc2l
XM_043224798.1 mRNA upstream 316026 13436542 ~ 13442457 (-) True LOC122328822
XM_043225556.1 mRNA upstream 373065 13493581 ~ 13495390 (-) True her9
TU232479 other downstream 1195348 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 1318366 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 1373378 11744119 ~ 11746620 (-) False LOC122328546
XR_006247899.1 other downstream 1374603 11745262 ~ 11745395 (-) True LOC122329329
XR_006247903.1 other downstream 1377195 11742670 ~ 11742803 (-) True LOC122329333
TU233029 other upstream 20562 13141078 ~ 13217408 (-) True G157367
TU233040 other upstream 159740 13280256 ~ 13282327 (-) True G157373
TU233846 other upstream 1206450 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 1460578 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 2226901 15347417 ~ 15474377 (-) False magi3a

Expression Profile