RNA id: TU233111


Basic Information

Item Value
RNA id TU233111
length 602
lncRNA type read_through
GC content 0.36
exon number 2
gene id G157417
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13801420 ~ 13882959 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttatgtagtggTGGAATGTCATAACTTTACTGTCTTCAGGTATTTCAACCACATTTTGAAAATCCATTCCTCTTTTTACAAAATGGtagatttcaaaacaaaaatttcaTAGCAAGAGCCAAAACATCAGTGCATGCTGTATCATAAAACCAATTCAAGTTGCcttttgtacaaataaaacatgaagtGTGCCCTAAATCACTATAAATTACCAGATTGCAAaccagtaaacaaaaacatatcttTTGTTAGACCACCCAACCCCcctttcaaaacaaatgtacaaatgttGCTTTTAATTGTACTGGCACAACTCACCAAAACCAGCCCAAACCAACATATTTCAGATCTCTATTCATCATGACTACCAGAGGTCTGaagacatttttgcttttattttttcttgcacTCCTCTTCACTGAGTCTTATTTTAATCAgacttctctttttctctcatatGCAGAAAGACGACGCTGAAAACAAAGAGTCCTGCCATCATAGAGAAGGCACTGGCATAATATGGAAAGGCAGAGGGGATGAAGCGCTCGTACTGGGTATGCTGCAAGGGGCGCACAGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233089 lncRNA upstream 306044 13493586 ~ 13495376 (+) True G157408
TU233085 lncRNA upstream 306943 13411670 ~ 13494477 (+) False G157408
TU233091 lncRNA upstream 359469 13438275 ~ 13441951 (+) True G157410
TU232971 lncRNA upstream 686246 13114958 ~ 13115174 (+) True G157329
TU232968 lncRNA upstream 694463 13106460 ~ 13106957 (+) True G157326
TU233174 lncRNA downstream 14872 13897831 ~ 13901092 (+) True G157459
TU233151 lncRNA downstream 55484 13938443 ~ 13939354 (+) True G157446
TU233186 lncRNA downstream 56447 13939406 ~ 13939898 (+) True G157471
TU233187 lncRNA downstream 57319 13940278 ~ 13940490 (+) True G157472
TU233188 lncRNA downstream 57907 13940866 ~ 13941487 (+) True G157473
XM_043224633.1 mRNA upstream 22746 13751746 ~ 13778674 (+) False ptpn11b
XM_043224632.1 mRNA upstream 22746 13758716 ~ 13778674 (+) True ptpn11b
XM_043224634.1 mRNA upstream 22746 13758820 ~ 13778674 (+) False ptpn11b
XM_043224201.1 mRNA upstream 54248 13538953 ~ 13747172 (+) False agrn
XM_043224202.1 mRNA upstream 54248 13538953 ~ 13747172 (+) False agrn
XM_043225565.1 mRNA downstream 22129 13905088 ~ 13911750 (+) True clcnk
XM_043224174.1 mRNA downstream 125261 14008220 ~ 14012879 (+) True szrd1
XM_043225021.1 mRNA downstream 161824 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA downstream 161824 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA downstream 161824 14044783 ~ 14050528 (+) False mlh3
unassigned_transcript_2622 other upstream 2282884 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2285549 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2287574 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2288722 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2624387 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 171405 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 173726 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 416742 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 801031 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 829188 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile