RNA id: TU233187


Basic Information

Item Value
RNA id TU233187
length 213
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G157472
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13940278 ~ 13940490 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taagtcatgATTAATTAACTCAGGTTTTTTTATAGCCGTACTCCTCCATGTGggatatgaaaaaaaacctccagAGCGGGTTAAGAAAACAACACTAATTCAATTTGAATGACATTGGGAGGGAAAAAGCGTCTCTGGAGGGAAAGAATTACTACACTGAAAATATTCCAGCTCTAACATGTAAAGCTCGAATCAGACAATTTCTAATGTGCG

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233186 lncRNA upstream 380 13939406 ~ 13939898 (+) True G157471
TU233151 lncRNA upstream 924 13938443 ~ 13939354 (+) True G157446
TU233174 lncRNA upstream 39186 13897831 ~ 13901092 (+) True G157459
TU233111 lncRNA upstream 57319 13801420 ~ 13882959 (+) True G157417
TU233118 lncRNA upstream 78072 13858965 ~ 13862206 (+) True G157423
TU233188 lncRNA downstream 376 13940866 ~ 13941487 (+) True G157473
TU233189 lncRNA downstream 1531 13942021 ~ 13942432 (+) True G157474
TU233190 lncRNA downstream 3099 13943589 ~ 13943919 (+) True G157475
TU233192 lncRNA downstream 3595 13944085 ~ 13953472 (+) True G157476
TU233195 lncRNA downstream 14622 13955112 ~ 13955546 (+) True G157479
XM_043225565.1 mRNA upstream 28528 13905088 ~ 13911750 (+) True clcnk
XM_043223991.1 mRNA upstream 108833 13824959 ~ 13831445 (+) False LOC122328345
XM_043223990.1 mRNA upstream 108833 13824967 ~ 13831445 (+) True LOC122328345
XM_043223987.1 mRNA upstream 115741 13814222 ~ 13824537 (+) True ttll10
XM_043224174.1 mRNA downstream 67730 14008220 ~ 14012879 (+) True szrd1
XM_043225021.1 mRNA downstream 104293 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA downstream 104293 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA downstream 104293 14044783 ~ 14050528 (+) False mlh3
XM_043225025.1 mRNA downstream 110201 14050691 ~ 14056567 (+) True kansl2
unassigned_transcript_2622 other upstream 2421742 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2424407 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2426432 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2427580 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2763245 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 113874 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 116195 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 359211 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 743500 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 771657 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile