RNA id: TU233189


Basic Information

Item Value
RNA id TU233189
length 311
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G157474
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13942021 ~ 13942432 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccTTGCGGGAGCGTTGAAAACTCCTGTTCCAAGCTGTGGCTGCCTGGGTTTCCTTCTGGGCTGAGAGCTTGAACTTTAAACAAGTAGACGGTGGAAGGAGACAGATCACTGATCTGAACCGAGTTCTTTTCCAGCACCAGCACAGTGTAGGTAGTGACCTTTCCGTTGGCTATCTCCTCATCATTTTCCTTTTTTGCGATACATCAGTTCATAACGCGTGGCAACTGGCTTGGAACGGTGAGAAACAGACCACTGAAGTGACAGGCTGGTGGAGCTGCTGTCCACAAGATGCATTGCAGTCACTTTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233188 lncRNA upstream 534 13940866 ~ 13941487 (+) True G157473
TU233187 lncRNA upstream 1531 13940278 ~ 13940490 (+) True G157472
TU233186 lncRNA upstream 2123 13939406 ~ 13939898 (+) True G157471
TU233151 lncRNA upstream 2667 13938443 ~ 13939354 (+) True G157446
TU233174 lncRNA upstream 40929 13897831 ~ 13901092 (+) True G157459
TU233190 lncRNA downstream 1157 13943589 ~ 13943919 (+) True G157475
TU233192 lncRNA downstream 1653 13944085 ~ 13953472 (+) True G157476
TU233195 lncRNA downstream 12680 13955112 ~ 13955546 (+) True G157479
TU233198 lncRNA downstream 39543 13981975 ~ 14040199 (+) True G157481
TU233221 lncRNA downstream 143162 14085594 ~ 14086952 (+) False G157496
XM_043225565.1 mRNA upstream 30271 13905088 ~ 13911750 (+) True clcnk
XM_043223991.1 mRNA upstream 110576 13824959 ~ 13831445 (+) False LOC122328345
XM_043223990.1 mRNA upstream 110576 13824967 ~ 13831445 (+) True LOC122328345
XM_043223987.1 mRNA upstream 117484 13814222 ~ 13824537 (+) True ttll10
XM_043224174.1 mRNA downstream 65788 14008220 ~ 14012879 (+) True szrd1
XM_043225021.1 mRNA downstream 102351 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA downstream 102351 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA downstream 102351 14044783 ~ 14050528 (+) False mlh3
XM_043225025.1 mRNA downstream 108259 14050691 ~ 14056567 (+) True kansl2
unassigned_transcript_2622 other upstream 2423485 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2426150 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2428175 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2429323 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2764988 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 111932 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 114253 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 357269 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 741558 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 769715 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile