RNA id: TU233192


Basic Information

Item Value
RNA id TU233192
length 592
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G157476
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13944085 ~ 13953472 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGCAAGGAGCTGTTTTGGGGTCCTCGGGTGCTTGATAAAAGCCGTCCTTGCAGGTGCAGCTGGTGGCGCCAGGACCTGAGGGCTGGGTGTTTTTTGGACAGGGTTTGCAGGCCTCGCTGGACACTGAAGATTTGAAGAAACCAGACTGAcatTCTTCACTGTTGCTGGACATGTTTTATAGTAAACCCTGACAGAGTAGATGGCGACGCAGGCCCCAATGTCCTGGAAGGCCAAGTAGAAGCCCTTGCGAGAAAGATTATCCACCATTTTTGTCTCAACGTTCATCTTCATCTCTCCAAGGCTAGAAATTTCATCTGGAGCAATGGTGGCCACTTTGCGGAACAGACCTTTGCGGAAAGCAGTGCCAATGTCGGCGTCTGCCTCAGAGGCGTACAAGTTAAAGGTCTCCTTGCAGATTAGCGAGTCTGCATTAAAAGAGTTGCAATCACGGACCACAAATCGCAGCTCCACAAAGACCCGAGAGGCGGTGGGGTGGCGCTGGATGAATGTAGTACGAAGCCAGTTGTCTTGTTCTCGTTCCTccacattacatatataatagTTATACAACAGAGAGCCGTTCACAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233190 lncRNA upstream 166 13943589 ~ 13943919 (+) True G157475
TU233189 lncRNA upstream 1653 13942021 ~ 13942432 (+) True G157474
TU233188 lncRNA upstream 2598 13940866 ~ 13941487 (+) True G157473
TU233187 lncRNA upstream 3595 13940278 ~ 13940490 (+) True G157472
TU233186 lncRNA upstream 4187 13939406 ~ 13939898 (+) True G157471
TU233195 lncRNA downstream 1640 13955112 ~ 13955546 (+) True G157479
TU233198 lncRNA downstream 28503 13981975 ~ 14040199 (+) True G157481
TU233221 lncRNA downstream 132122 14085594 ~ 14086952 (+) False G157496
TU233222 lncRNA downstream 132122 14085594 ~ 14087258 (+) True G157496
TU233216 lncRNA downstream 134109 14087581 ~ 14088519 (+) True G157494
XM_043225565.1 mRNA upstream 32335 13905088 ~ 13911750 (+) True clcnk
XM_043223991.1 mRNA upstream 112640 13824959 ~ 13831445 (+) False LOC122328345
XM_043223990.1 mRNA upstream 112640 13824967 ~ 13831445 (+) True LOC122328345
XM_043223987.1 mRNA upstream 119548 13814222 ~ 13824537 (+) True ttll10
XM_043224174.1 mRNA downstream 54748 14008220 ~ 14012879 (+) True szrd1
XM_043225021.1 mRNA downstream 91311 14044783 ~ 14050528 (+) True mlh3
XM_043225022.1 mRNA downstream 91311 14044783 ~ 14050528 (+) False mlh3
XM_043225024.1 mRNA downstream 91311 14044783 ~ 14050528 (+) False mlh3
XM_043225025.1 mRNA downstream 97219 14050691 ~ 14056567 (+) True kansl2
unassigned_transcript_2622 other upstream 2425549 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2428214 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2430239 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 2431387 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 2767052 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 100892 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 103213 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 346229 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 730518 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 758675 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile