RNA id: TU233224


Basic Information

Item Value
RNA id TU233224
length 970
lncRNA type sense_over
GC content 0.42
exon number 1
gene id c1qtnf12
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14094078 ~ 14126201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTCGAAGACAAGCGAGAATCCTCTCTCTGCACTTGAGTGATGATAGAACTTTCCATCTAACAAACGCGCAGCCCTCAACGTCCAACCGACCTTTTCCAGCGACGAACAGTCGGTCCGCATTTAGTGGCATTAAAAGCTAGCGACGcttgaaatgaataatttccGTTCGCGCAAAAATATCTCAAACCTACGGCgacaaaatattttgatatttatttattcccgCCTTCTATTCTCTTCCACATGGGAGGGGCATgacactttgttttgttttctcttatcTGCTATTTTCTAGGCTTCGCGTCTCGGTTTACTCTATCGCGTGTATATTTATCCATAGCCCCCTCTAGTCTTGGTAAAGCCCTCACTTTTTCTCCAACAACATGGAGAATCCAGgcgaaagaagaaaaacaaccGAGGACATGGGGCAAGGACGGTTTCAAGTTCCCCTTACTACAGATAAACAACCCCGTAGCTGGGCTATAtccaaaacagtatttttaaacgAGACACGACCAATTCGCTCAAACGTGAATTTTAAGAAGATAAGACGCGGAACTAGGCGATAATCGacgatttttgtgtttttccgcGTATTGTTTTGCTTTGGACGGACTCTCAGGGGCGCCTTGAAACAGCCGGTCGTTTCGGATTGGATCTCCAGGAAGTGGGAGTAGCTGAAGCATTCTTCTGTTCTGCTCGCTCCACACCGAAAACATTCCAGTGCTGGTTTTGTCGCAAATCAGTAGTCAGAAGCGGtcatattaaatctaaattgCAGTGGCGGAATGCAAATTTAATAATGAGGAAATTGCAAGGGAAATGAGTAATGCGATTGAACGGGTaatatctgaaaaaaatctcagtttttgaaaatgcatcacACCTAATCCACCTAATCATTTTTCTGCCGATCATCCTCAACATTGTTGTAGTTGTGCTgtgataattattaattaaggCTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233216 lncRNA upstream 5559 14087581 ~ 14088519 (+) True G157494
TU233215 lncRNA upstream 5559 14087952 ~ 14088519 (+) False G157494
TU233222 lncRNA upstream 6820 14085594 ~ 14087258 (+) True G157496
TU233221 lncRNA upstream 7126 14085594 ~ 14086952 (+) False G157496
TU233198 lncRNA upstream 53879 13981975 ~ 14040199 (+) True G157481
TU233251 lncRNA downstream 52363 14147410 ~ 14147616 (+) True G157521
TU233262 lncRNA downstream 101384 14196431 ~ 14196696 (+) True G157531
XR_006247865.1 lncRNA downstream 169617 14264664 ~ 14273735 (+) True LOC122328961
TU233288 lncRNA downstream 209527 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233289 lncRNA downstream 209527 14304574 ~ 14343274 (+) False si:dkey-151g10.3
XM_043224783.1 mRNA upstream 8908 14057970 ~ 14085170 (+) False nckap5l
XM_043224787.1 mRNA upstream 8908 14057970 ~ 14085170 (+) False nckap5l
XM_043224786.1 mRNA upstream 8908 14057970 ~ 14085170 (+) False nckap5l
XM_043224785.1 mRNA upstream 8908 14069433 ~ 14085170 (+) True nckap5l
XM_043225025.1 mRNA upstream 37511 14050691 ~ 14056567 (+) True kansl2
XM_043224793.1 mRNA downstream 11042 14106089 ~ 14126201 (+) False c1qtnf12
XM_043224791.1 mRNA downstream 11045 14106092 ~ 14126168 (+) False c1qtnf12
XM_043224792.1 mRNA downstream 11045 14106092 ~ 14126168 (+) False c1qtnf12
XM_043224789.1 mRNA downstream 11045 14106092 ~ 14126167 (+) False c1qtnf12
XM_043225303.1 mRNA downstream 46837 14141884 ~ 14149209 (+) True olfml3a
XR_006247900.1 other upstream 37257 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 39578 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2575542 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2578207 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2580232 11513773 ~ 11513846 (+) True trnan-guu_36
XR_006247782.1 other downstream 204654 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 588943 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 617100 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 640954 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 897303 14992350 ~ 14996145 (+) True G157656

Expression Profile