RNA id: XM_043224793.1


Basic Information

Item Value
RNA id XM_043224793.1
length 3611
RNA type mRNA
GC content 0.45
exon number 8
gene id c1qtnf12
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14094078 ~ 14126201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagagagagagagagagagagagagagaaagagcgagagacagagagagggctGTGATAAACTCTGCTGCGAGCTCTCCTGTAAGCAGAGTGAGAGAGTGCAGGAGCAAGAGCATAAGATCTGGAGAGCAACTCTGAGCAAGACCTAACACAAAGTCCACACAGATCGGGCACTCTGAGGTGAgcgtgcatgtgtttttgtcacCCTGCAGAACTGCGCTGATGCATTTGGGTGCGATCGTCCCGTCAAGTGCTTCTCTGCTTTGAAGTTGGCCGTGGGGGACTGATTTTTCCctgcaaggaaaaaaaagcaggagAAGGCCAAAGGCTACGAAAACTGGAGTGTTTCCAACTTCCAATTCCCTCAGGacgttttttttcccacctcGGCTTCAAGAAGGAACCACATGTGAAGACCGATGGGGCAAGAGCTCAGCATTGCTTACCAGAGAATCGGTTCAGATGCATCACCGCAAAGACTCCACATCCCAGTAGGAGCGAGACGGAGGTAAAGAACCAGTGAGAAAGTGAGCGGGAATCTGAGTAATTTTCATCCACTCCCCCCTTCCCACATTGGGACCTTCTTCAGTTGCCCTCTGCTACTCCCCGTGGGGCAGGAAGCGTGAAAAATCTCACTAATGGGTTTATTTGCTGTCAGCTCAGCGACGACCTGTCATTTCCCAGGACCACTCCACACTTGACACATTTCATAGTCGAGTaagctttgctttgtttttgcctAAAGAGCCTTTGCTTCACACTGTTAGCTGTTGAGAAGATCAAGACCAGGCTGAGGTATCAGGTGGAGCGGACTAGCCCCTTAATCACTTTGCCTGcctattacagtatttttcttCCAGTGAGGTCAAGCGTGTGGGACGTCTCGCTGTTCTTCTGTCTTTCTCCAAGTCGAGAAAATCTTCTGCTTTCTGAACCTACTACGGTCTCCTGGCTGGTGGGCTGAAGATGCGTCTCTGGCTGCTGGCTGTGGTGACGGCAGTGCTCTGGAGCCAGTGCATCCTTCTAGGGTGGGCTGAGGCTAGGAAGATGCGTAAGAGGCCGAAGGAGCTCGCGCCGCAGCACACCGAAGCGTTCAACACCACTCTTTCCAACAGCGAGGAGCTGGATGGCAGCACGAAGgtCAGTGAGAACCAGAGAGTGGACCCTCTTGGATCGTGGATGGATTTTGTGAAGAGACCTGTGGGCAACTTTCCCGGAAAATGCAGAAAGCGAAAACGACCACTGCCTGGTCCCCCTGGCCCTCCTGGACCCCCAGGCCCTCAGGGACCCCCAGGATCCCCTGGGGCAGAGGTCACCCAAGATGTCTTGCTGCGAGAGTTCAAAGAAATGATCAAAGAGGCCACTGAGAGGAGAGCAGCAGTGGACAGGCCCAACGAACCCAGTCAGTTGCCCACAGCTCTGATTACTCTAGAGAGTATGACCTCCTATAGGAGAATCGAGGAAGCCTTCCACTGCAAACTCAAAGGCCCTGTCGTTGTGGACAAAAAGACTCTGGCCGAACTGCAGAACTTTCAGACACCTCCAGCCAAAGGTGCCTTCCTCAGAGGGACGGGGATGGATCAGTCCACTGGACGATTTACAGCTCCTGTAACTGGAATTTATCAGTTCTCTGCCAACGTTCATATTGACCACACTGAGGTGAAGAAAAGTAAGAACCAGCTGAGAGCCAGAGACAACGTCCGGGTTTTGATCTGCATTGAATCGCTCTGCCACAGATATACATCCTTGGAGATGATTGTTGGCCTTGAGAGTAACAGCAAGATATTTACAGTATCTGTCCATGGACTGCTGGAACTTCAGgCCGGGCAGTACACCTCTATATTCGTGGACAATGCAGCTGGAGCATCGATCACAATACAGAATGGTTCAGATTTCATGGGCATGCTGTTGGGGGTATAGCCTTGTTTTACAGCCAGACTATATCTGGCAGGCCACGTAAGACTGCATAGCTCCTCTTTGGACTATCATCCAGCACCATATATCCTCATGAGACAATATGTGACTGCTACAAAGCTCTCGGCTTGCTCATGGACGAGACATGGACATAGTAATTCCCACAAAGCAGAGACAGTTGGATGCAAAACTGAAAGACTTTACTGAGGACAGTCGTTCTACATCTGCCTCTCTCATGTGCCGTCTACAGTGAGGTTTTTACCTCTTCAGAAAGATCAGTTCTCACTGATTCCACTCACCACGTCCTATTTTGTGATTTATAGATGTATACAAagagatttttgtattttgacatTGTGTTGTTATGACTTTCCTCCTAATTAATAGTGTTTATACAGAACGTTTATATacacagtttgttttttatggtGAGAGGTTTTCTACAATACAAGAGCTGAACTATTTTGGATTGATCTTGAAGGAATATGttaccctaaaatgaaaaacgtACAATGTCTCAccctcaggtcatccaagatgGCTTTCTTTCTTGAAAGGGATTTAGAGAATTTTAGCATTTCTGtgcatcctctgcagtgaatgggtgccgtcagtacGAGAGTTCAAAAAGCAGATAAAAACGAATCGATCAATTTTgctaatgctaaatttctcaaaatcCAGCTCAGTGAAGATCCAACTCATTTTGGATGCCCCGAGGGTGAgaaaaaattctacattttctcatttttgtgtgagctattcctttaaggattTTGTGATCTTACCCAAAGCACCTCCTCTTTTGCATACATgcctatatttttaaatataacaagcTAGACAAAGTTTTATTTACTATGCAGCTCAAAAAAACATGTTGTAGTGACTTGATTATTGATAAAAGAACAGATTTTCCATTATACTCGGCCAAAAGAAGGAAACAGCCAAATacaagaaaagaaacaagatgAATGACTCAGTCTATTTTTACGTCCAACAGCTAACAGTCCCAAACAATAGCGTTTATCaaggagtgtgtgtgaatgtgtgtttggaaAGCTACTGCCATGATCGATTAGACATGTTAGAGTCCTGCTGAGTTCTCATTTTGTTTACTGCAATGCCAAATACGTCATCTGAATGCTCTGTTTTTCACGTCTCCATGGAAGTTTATTCTTGCTTTCTTTCAGAtgtgtttcttttcttcacTTTCCCTCAAAACGTCGTCTTTGTTATTAACTTCAGTGAATAGAgaaatttaaatgcacatatattttaGCATATGTACAATTTTCCatacaaattatttatgtttaaatgtatctgccaattaaaacagatttatttttttaattggcttCTAGCCTTCCAGTAGATCTCAATACAAGTGAAAATAATGTAAGCGAACctgtttaaatatacagtatttgctTGTATTGTGGTGTAATGGAAATGAAACtatattcaataaatgtaaaatatacctATTCACCTGGGCATGTTTGCGGTTGACTCGAATGGACTTTTATGAGCTTTGAAATCTTGCTAACGTTCGTAATTCTCTGCTCGATAAAGCAGGCAGGACGTACTCCCGGTGCCGCACGATGAAGCTCATGGAAAAAATTCTTTGGTGCGCTAGTgtggaaaatgcttttttttgcatcatttgcaTTGTAAATAATCCAGGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233224 lncRNA upstream 11042 14094078 ~ 14095047 (+) False c1qtnf12
TU233225 lncRNA upstream 11589 14094078 ~ 14094500 (+) False c1qtnf12
TU233223 lncRNA upstream 11631 14094078 ~ 14094458 (+) False c1qtnf12
TU233216 lncRNA upstream 17570 14087581 ~ 14088519 (+) True G157494
TU233215 lncRNA upstream 17570 14087952 ~ 14088519 (+) False G157494
TU233251 lncRNA downstream 21209 14147410 ~ 14147616 (+) True G157521
TU233262 lncRNA downstream 70230 14196431 ~ 14196696 (+) True G157531
XR_006247865.1 lncRNA downstream 138463 14264664 ~ 14273735 (+) True LOC122328961
TU233288 lncRNA downstream 178373 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233289 lncRNA downstream 178373 14304574 ~ 14343274 (+) False si:dkey-151g10.3
XM_043224783.1 mRNA upstream 20919 14057970 ~ 14085170 (+) False nckap5l
XM_043224787.1 mRNA upstream 20919 14057970 ~ 14085170 (+) False nckap5l
XM_043224786.1 mRNA upstream 20919 14057970 ~ 14085170 (+) False nckap5l
XM_043224785.1 mRNA upstream 20919 14069433 ~ 14085170 (+) True nckap5l
XM_043225025.1 mRNA upstream 49522 14050691 ~ 14056567 (+) True kansl2
XM_043225303.1 mRNA downstream 15683 14141884 ~ 14149209 (+) True olfml3a
XM_043225465.1 mRNA downstream 91306 14217507 ~ 14225401 (+) False klhl21
XM_043225466.1 mRNA downstream 94024 14220225 ~ 14225401 (+) True klhl21
XM_043225464.1 mRNA downstream 106900 14233101 ~ 14239250 (+) True nol9
XM_043225467.1 mRNA downstream 114544 14240745 ~ 14245704 (+) True casp9
XR_006247900.1 other upstream 49268 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 51589 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 2587553 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 2590218 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 2592243 11513773 ~ 11513846 (+) True trnan-guu_36
XR_006247782.1 other downstream 173500 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 557789 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 585946 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 609800 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 866149 14992350 ~ 14996145 (+) True G157656

Expression Profile