RNA id: TU233363


Basic Information

Item Value
RNA id TU233363
length 1717
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G157608
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14564340 ~ 14566056 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttgttttgagaGAAATTAAagaatattcacatttatttactcTAATTACCTTGTAGatcatctttttttcctttttgcatgTTTGCAACCGAAACGTGCATGTTAATTTCATAGTCaataaatttcaataaatatcatttattggTCACACATTGTCTGTAGATACTACTACTGTAAAGGCCACACACAGGAAACAATGGTCATATGTAGCATTCTGTTTAAATCCAGCCACAGtgattttgcactttttttgtgaACATTGCAAATTTGTGTACACATCCAAAATCATTCACGActcattttcttcaaaaaatagATCTGTGCTATGgcatacattaataaataatgtataaataagttatgctgaaaataaataaataatgctcaCAAAGCATATCTCAATCAAGCTGACCTTACGATGGCAGCGAAAATCAAAGTAGAAAATTcctataaaatattaagttaattcaaatgaaagcactgattatttaaatctaatttgcaattcatacagaaatgtaaatgtcactTTGATTCTTATGTGCACTCCTAAAACCCAGCCAGCGATTCAAAAAACTTAACACTAAGTTATGAAAATATTCATCACAATATCTAGTATCTCAGAATAACTTGTTAAACTGTCCTCATGCTGCAATATCACATATGAAACTTTTTCAGACACAAAGAGGAATCCGGCGGACAACGATGGAGATATCCACTTCAATCTAATGCTCTAATATTTCATGCACTTTTACTGCTAATGACATCGTGTAGCTTTCACAGTTGACACcagtgcatttaatattttctgttttgttttctatggCACCATTCGTAAAACTAGCTGAATGCTGTTAAAGTTTTACCGGTGTACAAAAGCAATGTATATGCGAGACCTCCTTCACGCTACAGGACAAACGCATGGCACATCGTAAAAAGCTAAGGTGAGCTTAAACACGACAGCATGCACCGAAGATCCACATCATGCTGGAAGGACACGGTCACTCAGttcagagagacagacggaAGACTTCAGGTTAACAGCACATTCACTCCCGCTCTGGAGTGCCAAACAACTggaggaagaaagagaagatgTAAACAATGTCCAGGTATAGGCTGAGGGTGGCAAAGATGTGTTCCTCAGGACTTATGGTGTATTGCTTTTTCCCCATCAGCATCTGTGTGTCAAACGCCAGGAACTACAAGACAAAAGAGAGATGGAAATGACAATAATTACCAACAAATACAAGGGACAATGTTGTGTAGGGGTCCTAAAAGCCTTATCGATAATGATATGCTGACTGTGCATTATCAACTTTTTATTGTTActcaaacaaagaaaataacgTGTGTATATTTAAACCCTGTGAAGCCTACTCTTATCATATTTGATATACAAAGGCCTCTAAATAAAAAACTTCTCTTAAAAAAACTGCTACATTACTTGTTTTacctgatttaaataaaatacctttcagtaaatatcttttttcttctgtgaaatttttacagatttttatgaatataagaatgacttttatattgttagtattattagtaatatgaaGACTTGCTGGACTGAAGCAACTTGTGTATGAGCTCCATATTCTCAACATATCATGccataacatttttgttcaagGATTGTCTATaggtttcaaaaaacatttttcaggtttcattaaaaaaactgaaacagatTCTGATTGTAC

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233302 lncRNA upstream 189290 14373577 ~ 14375050 (+) True G157551
TU233288 lncRNA upstream 221066 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233289 lncRNA upstream 221066 14304574 ~ 14343274 (+) False si:dkey-151g10.3
TU233290 lncRNA upstream 221066 14304574 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247865.1 lncRNA upstream 290605 14264664 ~ 14273735 (+) True LOC122328961
TU233364 lncRNA downstream 463 14566519 ~ 14566730 (+) True G157609
TU233365 lncRNA downstream 1145 14567201 ~ 14568506 (+) True G157610
TU233366 lncRNA downstream 3076 14569132 ~ 14569509 (+) True G157611
TU233375 lncRNA downstream 37737 14603793 ~ 14623728 (+) True pkig
TU233373 lncRNA downstream 37962 14604018 ~ 14623728 (+) False pkig
XM_043225541.1 mRNA upstream 10210 14531453 ~ 14554130 (+) False rbms2b
XM_043225540.1 mRNA upstream 10210 14531454 ~ 14554130 (+) True rbms2b
XM_043224631.1 mRNA upstream 108797 14453706 ~ 14455543 (+) True LOC122328739
XM_043224627.1 mRNA upstream 136157 14390815 ~ 14428183 (+) False fmnl3
XM_043224629.1 mRNA upstream 136157 14390815 ~ 14428183 (+) False fmnl3
XM_043224259.1 mRNA downstream 6191 14572247 ~ 14580946 (+) True r3hdml
XM_043224256.1 mRNA downstream 14976 14581032 ~ 14598335 (+) True hnf4a
XM_043224255.1 mRNA downstream 26855 14592911 ~ 14598335 (+) False hnf4a
XM_043224023.1 mRNA downstream 34099 14600155 ~ 14603653 (+) False ttpal
XM_043224022.1 mRNA downstream 34171 14600227 ~ 14603653 (+) True ttpal
XR_006247782.1 other upstream 221066 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 507519 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 509840 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3045804 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 3048469 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233368 other downstream 117934 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 146091 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 169945 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 426294 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 734648 15300704 ~ 15304550 (+) True G157620

Expression Profile