RNA id: TU233375


Basic Information

Item Value
RNA id TU233375
length 1537
lncRNA type sense_over
GC content 0.42
exon number 4
gene id pkig
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14603793 ~ 14636817 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CcggcacaaaaaataaaatcagaaaaaaatatacagtactaTTAATATCTTCTTCAAAGTATAAAGGGATTTTCAGGAATTAGAATGCttactttgttcatttttgctgACAGTGGTGGCTAAGTTTccaaattttataataaaaaaacaatggcCGTGGAATGGGATTTTGGCGGAAACTGGTTACCATGGTAATTTCGTGAGGGCATTCAACGCTCGCGGCCGCGTACTGCAGCTTGGAAACTTGCTTCCTCTTCATATATCGTCCTAAACACAAACGTTTCAAGATGCAGATGATCCAAAGTTGCTGTTTAGCGCGCATTCTTCACGAAAGCAGCTCCGCGTGAACAAAGCGAAGTGCCGTTATTGACTGTCAGTGGAGCGTCGGATGTGACCGGGGATCTCCGAAAAGATCAAGTAAAATCCATTGAATCGGACTGTGGAATGCGGGACGAGCTTTAGGAAATAAAGGGGAATCCCGACCAAGAGTAAATGGCGTATGGCGTAGTAACAAGTGGAAGAAAGTGAAGCGGATCAAGgtgTAATGAGAGGGCAGTTTGTGAGCAGATGATGGACGTTGAGACGTCATATTCAGACTTCATAAACTGTGATCGTACCGGTCGCAGGAATGCAGTGCCAGACATTAAAGGAGAGTCAGTAGCGGTGGGGACCGGTGATCTAACCAAAGACATGGCTCAGATGGACCTGAAAGCTGCAGAGGGAGATGCTTCTGGTTCTCCAGCCCCAGAAGCAGAGGCATCCGGGAGCCAGGATAAACAGGGGACAGAGGGACCGTCATAAAGACGAAGAATGACCCggaggagagagaaaagccGAGGAGTTCTCTCCTTTTCTCATCAAAATTCTCCTCATCTTTGCTCATCGGGCAGCGGTGAAGAGCTCCTCTCATAGACTGCCATTAAGGTGGACATCCACCCATTGCATGCTGTTGAGTGCCTAAGAGACAGATGGAGAAGACACTGCCTTTGCAAACACCACTAAATGGGACAAATCTGTCGAGGACTGTATTCATTCACAGCGCTGAGTAAGGgaagtttgttttttctaaCAGAGGTCGAACAGAAGCACAGgcgttttgatatttttccatCCTAAACTTAAACTAAACGGTTCAATCTTGAGTTGAGTTACTGTTAAAACAAATACTCAGAGCTACTGTAAACTCTAAAGTACCAAATATAGCCTTTTTGTTACAGCCTATGACATGGATGgctcacttttaattttttcttcttttttttaaacaatgatcACTACAGTTGAAGGTGGTCTGATTATAGAACAGAATTCCCAAATATTGCCTGAGGTCAGAAGAGGTTTGTTTCTATACTTCATTATATACTGTAACACAAATGTAACATAATTAACTATATTTATGTAGTATCTGAGTTACTGCTTTCTGCTCCTGGCACTGTTTTGTGGTTTTTGTCAAGACTCTCAGAAACACTTGTtaaaacacattgcatttatattgtgaCCTATAAATGTAAGTACCTCAAAATAAACAGGAATGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233366 lncRNA upstream 34284 14569132 ~ 14569509 (+) True G157611
TU233365 lncRNA upstream 35287 14567201 ~ 14568506 (+) True G157610
TU233364 lncRNA upstream 37063 14566519 ~ 14566730 (+) True G157609
TU233363 lncRNA upstream 37737 14564340 ~ 14566056 (+) True G157608
TU233302 lncRNA upstream 228743 14373577 ~ 14375050 (+) True G157551
TU233377 lncRNA downstream 87 14623815 ~ 14636817 (+) False pkig
TU233407 lncRNA downstream 3862 14627590 ~ 14629198 (+) True G157624
TU233410 lncRNA downstream 8112 14631840 ~ 14636121 (+) True G157626
TU233380 lncRNA downstream 48416 14672144 ~ 15153978 (+) False itih6
TU233426 lncRNA downstream 53008 14676736 ~ 15158751 (+) True G157630
XM_043224023.1 mRNA upstream 140 14600155 ~ 14603653 (+) False ttpal
XM_043224022.1 mRNA upstream 140 14600227 ~ 14603653 (+) True ttpal
XM_043224256.1 mRNA upstream 5458 14581032 ~ 14598335 (+) True hnf4a
XM_043224255.1 mRNA upstream 5458 14592911 ~ 14598335 (+) False hnf4a
XM_043224259.1 mRNA upstream 22847 14572247 ~ 14580946 (+) True r3hdml
XM_043223963.1 mRNA downstream 18663 14642391 ~ 14646962 (+) True ccn5
XM_043223964.1 mRNA downstream 23379 14647107 ~ 14649232 (+) True si:dkey-78k11.9
XM_043224379.1 mRNA downstream 26052 14649780 ~ 14659932 (+) True pfkfb1
XM_043224378.1 mRNA downstream 29765 14653493 ~ 14659932 (+) False pfkfb1
XM_043224380.1 mRNA downstream 31200 14654928 ~ 14659932 (+) False pfkfb1
XR_006247782.1 other upstream 260519 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 546972 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 549293 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3085257 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 3087922 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233368 other downstream 60262 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 88419 14712147 ~ 14714533 (+) True LOC122328914
TU233447 other downstream 112273 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 368622 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 676976 15300704 ~ 15304550 (+) True G157620

Expression Profile