RNA id: XM_043224997.1


Basic Information

Item Value
RNA id XM_043224997.1
length 454
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC122328914
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14712147 ~ 14714555 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAGGAAAATGTGCGTTAGCGTGTGGACTGAGGGAAGCCCCTAGTTAGCCAAGAGTGGAAAACATGGATGATGAGGAGGTCGCCGAGAGTTGGGAAGAGGCCGCCGATAGCGGGGAAATGGAAAGGAGACTAGAGGAAAAGCTTCGAATCAGTCAGAAAGAAAGACTTTCAAGTGGCAGTTCAAGCCGTTCTCCGATGAGGACAGCGATCGTAATCCAGGATGACTCCCTCCCCGCAGCACCCCCTCCTCAGATTCGTATTTTAAAGCGACCCTCCAGTAATGGATCTTTAGGATCATCTGTGACGCAGACTCGACCCTCCCCACAAGTAAAATCCTTAGCTCAGCGAGAGGCAGAATACGCAGAGGCCAGGAAGAGAATCCTTGGTAGTGCTACTCCTGATGACGCACCACAGGAGAGATCCAATTCAGACCGGTAAAATACTGACACACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233436 lncRNA upstream 9565 14702443 ~ 14702869 (+) True G157634
TU233434 lncRNA upstream 10259 14699940 ~ 14702175 (+) False G157633
TU233377 lncRNA upstream 75617 14623815 ~ 14636817 (+) False pkig
TU233410 lncRNA upstream 76313 14631840 ~ 14636121 (+) True G157626
TU233407 lncRNA upstream 83236 14627590 ~ 14629198 (+) True G157624
TU233443 lncRNA downstream 5379 14719934 ~ 14721485 (+) True G157640
TU233425 lncRNA downstream 441906 15156461 ~ 15158751 (+) False G157630
TU233431 lncRNA downstream 465041 15179596 ~ 15309487 (+) False G157633
TU233485 lncRNA downstream 467580 15182135 ~ 15311694 (+) True G157673
TU233496 lncRNA downstream 498772 15213327 ~ 15341005 (+) True G157676
XM_043224986.1 mRNA upstream 25816 14680860 ~ 14686618 (+) True LOC122328906
XM_043224377.1 mRNA upstream 39248 14659379 ~ 14673186 (+) True itih6
XM_043224379.1 mRNA upstream 52502 14649780 ~ 14659932 (+) True pfkfb1
XM_043224378.1 mRNA upstream 52502 14653493 ~ 14659932 (+) False pfkfb1
XM_043224380.1 mRNA upstream 52502 14654928 ~ 14659932 (+) False pfkfb1
XM_043224989.1 mRNA downstream 11355 14725910 ~ 14758217 (+) True LOC122328907
XM_043224987.1 mRNA downstream 11355 14725910 ~ 14749563 (+) False LOC122328907
XM_043224988.1 mRNA downstream 11355 14725910 ~ 14749514 (+) False LOC122328907
XM_043224991.1 mRNA downstream 44835 14759390 ~ 14770326 (+) True LOC122328909
XM_043224992.1 mRNA downstream 359461 15074016 ~ 15077510 (+) True LOC122328910
TU233368 other upstream 27118 14683990 ~ 14685316 (+) False LOC122328906
XR_006247782.1 other upstream 369160 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 655613 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 657934 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3193898 11518465 ~ 11518536 (+) True trnae-uuc_33
TU233447 other downstream 21446 14736001 ~ 14749402 (+) False LOC122328907
TU233466 other downstream 277795 14992350 ~ 14996145 (+) True G157656
TU233395 other downstream 586149 15300704 ~ 15304550 (+) True G157620
TU234237 other downstream 1269115 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 1293089 16007644 ~ 16008846 (+) False G158152

Expression Profile