RNA id: TU233426


Basic Information

Item Value
RNA id TU233426
length 2795
lncRNA type read_through
GC content 0.43
exon number 3
gene id G157630
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14676736 ~ 15158751 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGGTACAGGTATGGGCTCTTCCCGTAGCGTGCCAGAGACTCGCTGTAGAGCTTGATCCTATTGATGGTCTCCAGACACGGCTGTCCTGTAGAGCGCCAGGGCATGTCCCGTGAAGTCGATGACGTCCTGACCCAAGTCAAACTTCTTATACACGTCTCCCATTGTTGTGAGTTTGGGATCGACACCTTCCAAAGTCTTGGGGTCGTTCTCATCAAAGTTGGCCACAAAAACTAGGAACTTGCGGAAGCGTCTCTTCTCAAACATTCCCATTAGATCTGAGCAACACACGTCACGGGTCAACTACTTTTATCAAAAACAATCAGTCGTGAGTTATAAAAACTAGCTGGACTTACTTGAAGCCAGTGCCTCTGTCTCAGTAGAGGGCACTTTGTAGATTTTTCCTCCTTTATACACAAAGCTTCCCTCGACCACTTTGAAGTCAAGATATCTGGTCACTTCAGTGTATAGAAGCATCTTAACTAACTGACcttaaggaaaaaaacaatgacaaagcGTAGTGGCGCATTATTAttctgaatataataaaaaatggcaGCCTTGTATGAATTACTAatccaaaaacatgttttgaacAACATTATCACACCAACTATCATTTTACTTAGGTTTTTACCATTGGCCATTAAAAATTTAGGAATAAGATCCACATTCCAGTCTCTTCCCCGGCCCATTGACTCTGGGGGGCTGTCTGAAATCCCAAATCTCTTATAGAGCTGAGAGAAAAGCATGTAAAATGTGAGTGcatgtgtaaatgtttaataaaatgtattttgcaatttcataaacacttttttaaaaatacatggcTACAAATAGCAACATTTATTCTTGCAATTAGGCTACGCAGTTATAGTAAACATGCAATATCAAGCAGACATGAGATTGGAGTAGCGCCAGCGGTAAATGTGAAGCATCCTCACCTCCTCCAGGGGTGTGATGGAGGAACTTTCACCACCGTAGTATGGATTTCTGTCCATATGCAAAACTTTCTTTCCATTCACAGACATGATCCCAGAGAGAATACATTCCTACACAGATAAACACCATTATTGTAATCGGCCATGGAtatgaatttccatttttttttattcatgagtTGACATGGCAGCGTGCATCTATCCATTGCCTTGACTTCCGTGTTAAACACTGGGATGGATGCGAGTCACCCCACCCAACTAGTGATGCAAAGTCCGAATCATTTCCgcgaatcggttcttttgaGCAGTTAATGGAGCGCTTCGAAAACCAATTCTTCTGATTCGTCTACGTCACTCTGACAGCCCACCGAGGCctatcaaatgttttaaagctttattaaCAGCTGTGTTTATTGCAATTGTATGTGTTCAAATTAAGTTCGTTGCAGCcattacataaaacaataataatttacaacCTAAATAAAATTTACAGTTACATTAAACGATACTATAATCTTAGCTTCAGGTTTACATccaactgtttttgttttaacaatttCCACATAATTAAGTCGAAAATACATTTCCAGGAGGCATTTAAAAAACTTCTACCATTAAGTCAACGACAGACCCTCTCGTATCGATTCAATGAAAAGAACCGACTCACAAGAACAACTCGTTCGCGAATCGAACAACGCTACACCCAACCCACATTACGAGCCGCAGCCCATATCAGCCACTATCCTCCATGAAGATAAAGAACGCGtttgataaaaagaaaacactttattttacatctaatttattatttgcattaaccAATACTGTTTTCTGCACGCGAGCGACCAATGTCATTCGTAAAATCGGGCTCTTTAgattataacaataacaaaaaatgaatacagcCAATTGCAGGCAAACAGTAAACTAACATCACTTAAGTACGACACAGCTGTAACGCTGGCAAACGCAAAAGCCAAAATATGCgcagtaaatacataaatcccCCCTATTTCGACGCCCGAGCGAACGGGATACCTGATGCCACTCCTTAGAACCAGACACTGAGAGAGAAGAAtcattcattactttttaataaccGCGTTCATGTCAATACAACGACGCAGCCTCGACGGCTTTAACATTCGGGGGAAGGTGGATTTGGCGTGGATTGCGCTCGTATGCATGCAGAAATTGCGAGAAATGCTGGCTCACTACACAGACACAGTACAGTACTGGTCCAAAGGATGCGTCAGCAATAGGCCGTCGGGTTCAATCTAACGCTAAGCATCTATTCGTTCAGCCACATCTACGAGCATCCGAGCACGGGGGAAGGTGGATTTGGCGTGGATTGCGCTCGTATGCATGCAGAAATTGCGAGAAATGCTGGCTCACTACACAGACACAGTACAGTACTGGTCCAAAGGATGCGTCAGCAATAGGCCGTCGGGTTCAATCTAACGCTAAGCATCTATTCGTTCAGCCACATCTACGAGCATCCGAGCATCCGTCGGCGATATCTTAATCCGTTCCCGAAGCCAGCGAGTCGTCGGTGACCCCAACGCGTTACTCACTGTGAGCCCGGTGCCCAGTACGATAACATCATATTCCTCATCCATGTTGTATTACGGTGGATATCCCGTCTTTAGCCAAATTTccgctgcaaaaaaaaaaatatctgcaaaaCGGCCGTGGATGCAACGAAATATTTATGCGGAACCGGTCTGTTGTCCCGTTCGCGGCAGAAACGACCTCCCTGGAAAGAATTTATCGCTCAAATAATTCGATACGTATCACAATTGATCGCTGACTGTGGCGCGACCGGCGAGAACAACCAAAGATGGCCCTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233377 lncRNA upstream 39919 14623815 ~ 14636817 (+) False pkig
TU233410 lncRNA upstream 40615 14631840 ~ 14636121 (+) True G157626
TU233407 lncRNA upstream 47538 14627590 ~ 14629198 (+) True G157624
TU233375 lncRNA upstream 53008 14603793 ~ 14623728 (+) True pkig
TU233373 lncRNA upstream 53008 14604018 ~ 14623728 (+) False pkig
TU233431 lncRNA downstream 20845 15179596 ~ 15309487 (+) False G157633
TU233485 lncRNA downstream 23384 15182135 ~ 15311694 (+) True G157673
TU233496 lncRNA downstream 54576 15213327 ~ 15341005 (+) True G157676
TU233537 lncRNA downstream 320292 15479043 ~ 15482462 (+) True G157704
TU233538 lncRNA downstream 323921 15482672 ~ 15486980 (+) True G157705
XM_043224377.1 mRNA upstream 3550 14659379 ~ 14673186 (+) True itih6
XM_043224379.1 mRNA upstream 16804 14649780 ~ 14659932 (+) True pfkfb1
XM_043224378.1 mRNA upstream 16804 14653493 ~ 14659932 (+) False pfkfb1
XM_043224380.1 mRNA upstream 16804 14654928 ~ 14659932 (+) False pfkfb1
XM_043223964.1 mRNA upstream 27504 14647107 ~ 14649232 (+) True si:dkey-78k11.9
XM_043224984.1 mRNA downstream 999 15159750 ~ 15165538 (+) True LOC122328905
XM_043224965.1 mRNA downstream 165593 15324344 ~ 15338267 (+) True ptpn22
XM_043224113.1 mRNA downstream 316972 15475723 ~ 15478611 (+) True si:ch73-206d17.1
XM_043225537.1 mRNA downstream 441901 15600652 ~ 15608453 (+) True zgc:158263
XM_043225542.1 mRNA downstream 514301 15673052 ~ 15685048 (+) True cacnb3b
XR_006247782.1 other upstream 333462 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 619915 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 622236 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3158200 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 3160865 11515799 ~ 11515871 (+) True trnaf-gaa_120
TU233395 other downstream 141953 15300704 ~ 15304550 (+) True G157620
TU234237 other downstream 824919 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 848893 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 863448 16022199 ~ 16023394 (+) True G158162
TU234659 other downstream 1462447 16621198 ~ 16664314 (+) True G158446

Expression Profile