RNA id: TU233435


Basic Information

Item Value
RNA id TU233435
length 1474
lncRNA type read_through
GC content 0.36
exon number 3
gene id G157633
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14699940 ~ 15309487 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGGATTACACAAGTAACCAAGACATTATGTTGACAACACGACTAAGCAATTTGACCATCTTATCCGTACACAATGACACAAGATCTtgtcattctgatggcactgaCAGGTTCGTTGacacagatatttatttttgagggATGAACTGAGGATTTTGAGCAACAGACTGCCTTATGCAGGTAATTCATGGTGTTTTACTATTTGTACgaaatgcacTTACTGTTTTGCAAATGTCAAGAACGATTCGAGAAATGTACCAAAGTGACTGAGAAAAACGCAAATGCTCCCTCCTGGTGGAATGACCTGCCTAACTCAATCTGAGCAGCTGAATCCTTAGCTACCTTCAAGAATCagctaaaaacaaatcttttccatctttatttgaccctctAACAATCTCTATTCTAACTCTATTCTTTAAACAAACTGTACCTTTTAGACTTGCACTCTATTCATTTACTGCAGGTTCtcctttataaaaaataaataaaataataataataataataaagctaaaAGCTAATACTAGCTTTTCTAATCCTCTAGCATTTtctatggttttgttttgtcatttggaGCACCACATGTTCTGGCCTTCGTTTTCTGCTAAACATCTCCTTTGTGTTTGACAAAAATCAGATCCAGAAAGACACAGTTAAATGGCAGTACTTGCCTATGCAGGTCTGGGTTACTTTTGTCCACTTGGTTTCCTCACAGGTGATTGACTGAGATGTTGTACCATTTGGCTTATATCCATCAATacactttactgtcactttggatCCATGTGGGAAAGTTTTTGAGAGGGATTGCGGTGTTAATGTGAGTTGGTCACTTAAAACAGGTGCAGTACAAGGCGCTGTTGAGATAAACACAAGAGACAAACAATATAACTTGGtatatgacaatattttattttaagcaaactgTTCTTTCAATGTTGTCAATTCTTTCAGACAGAACACGTTCATgcaattagaaaaataattttagtctTACCAATGCACTTTGGTACTTCAGGGTCCCAGCCATTTTCTCTACACACAATATAACCGTCTCCTTTCATTGTATAGTCATTTTCACAACTGTATTCTACAAAGTTACCCAGTTTGTACGGAGGTGACTTTCCCTTGACTCTTTTTGAATTTGCAATTATAGGAACTGGACACCcatctgaaaaaaagtaaaaggaaCAGTATtgatgattaaatattttattctttatcaGGAAGAAACTcaatagtgattttttttttcctttgtctcTTGACTGGCATTTGAACCATAACTTACCAAAACATTTTGGTGGATCTGGTTTAAATGTTCCATCCTCAGAACAATAAATTGATGCTGGTCCTATAAGATTAAGTCCTCCATTACATGTATAAGAGACTGTTTCTAAATATGCATAACTTTCCAATGGCTCATCTTTAAGTCGTCCATTATCTATGGATGGAGGGGCTGTACATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233377 lncRNA upstream 63123 14623815 ~ 14636817 (+) False pkig
TU233410 lncRNA upstream 63819 14631840 ~ 14636121 (+) True G157626
TU233407 lncRNA upstream 70742 14627590 ~ 14629198 (+) True G157624
TU233375 lncRNA upstream 76212 14603793 ~ 14623728 (+) True pkig
TU233373 lncRNA upstream 76212 14604018 ~ 14623728 (+) False pkig
TU233485 lncRNA downstream 304 15182135 ~ 15311694 (+) True G157673
TU233496 lncRNA downstream 31496 15213327 ~ 15341005 (+) True G157676
TU233537 lncRNA downstream 297212 15479043 ~ 15482462 (+) True G157704
TU233538 lncRNA downstream 300841 15482672 ~ 15486980 (+) True G157705
TU233565 lncRNA downstream 358962 15540793 ~ 15543928 (+) True G157728
XM_043224986.1 mRNA upstream 13322 14680860 ~ 14686618 (+) True LOC122328906
XM_043224377.1 mRNA upstream 26754 14659379 ~ 14673186 (+) True itih6
XM_043224379.1 mRNA upstream 40008 14649780 ~ 14659932 (+) True pfkfb1
XM_043224965.1 mRNA downstream 142513 15324344 ~ 15338267 (+) True ptpn22
XM_043224113.1 mRNA downstream 293892 15475723 ~ 15478611 (+) True si:ch73-206d17.1
XM_043225537.1 mRNA downstream 418821 15600652 ~ 15608453 (+) True zgc:158263
XM_043225542.1 mRNA downstream 491221 15673052 ~ 15685048 (+) True cacnb3b
XM_043225416.1 mRNA downstream 509679 15691510 ~ 15702243 (+) True rnd1b
TU233368 other upstream 14624 14683990 ~ 14685316 (+) False LOC122328906
XR_006247782.1 other upstream 356666 14299701 ~ 14343274 (+) False si:dkey-151g10.3
XR_006247900.1 other upstream 643119 14056685 ~ 14056821 (+) True LOC122329330
XR_006247901.1 other upstream 645440 14054364 ~ 14054500 (+) True LOC122329331
unassigned_transcript_2622 other upstream 3181404 11518465 ~ 11518536 (+) True trnae-uuc_33
TU233395 other downstream 118873 15300704 ~ 15304550 (+) True G157620
TU234237 other downstream 801839 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 825813 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 840368 16022199 ~ 16023394 (+) True G158162
TU234659 other downstream 1439367 16621198 ~ 16664314 (+) True G158446

Expression Profile