RNA id: TU233485



Basic Information


Item Value
RNA id TU233485
length 284
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G157673
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15182135 ~ 15311694 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCTTTGTCACAAACTACTTTAGCTGTATCACCAAATaaatttccattcatttcatatttcccATTGGTAATATCTGCAAGGCTCCCACAGgattttTTATGCAGCTGAGTTCTAGATTTGTCCACTGGGTTCCCTGACAGGTAACTGTTTTAGAACTTTTTGAGTCAAGTGGCTTGTGTCCAAGAATGCAACCAAATGTTACAGTGGATCCATCTGAGAAACTCAAAAGAAAATCTTCCGTTTGCACATTTTGTGATGCAAAAGAAGGCTGCGTGCATTCCgct

Function


GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU233435 lncRNA upstream 304 14699940 ~ 15181831 (+) True G157633
TU233426 lncRNA upstream 23384 14676736 ~ 15158751 (+) True G157630
TU233425 lncRNA upstream 23384 15156461 ~ 15158751 (+) False G157630
TU233380 lncRNA upstream 28157 14672144 ~ 15153978 (+) False itih6
TU233443 lncRNA upstream 460650 14719934 ~ 14721485 (+) True G157640
TU233537 lncRNA downstream 167349 15479043 ~ 15482462 (+) True G157704
TU233538 lncRNA downstream 170978 15482672 ~ 15486980 (+) True G157705
TU233565 lncRNA downstream 229099 15540793 ~ 15543928 (+) True G157728
TU234068 lncRNA downstream 299913 15611607 ~ 15615798 (+) True G158030
TU234069 lncRNA downstream 301541 15613235 ~ 15613850 (+) False G158030
XM_043224984.1 mRNA upstream 16597 15159750 ~ 15165538 (+) True LOC122328905
XM_043224992.1 mRNA upstream 104625 15074016 ~ 15077510 (+) True LOC122328910
XM_043224991.1 mRNA upstream 411809 14759390 ~ 14770326 (+) True LOC122328909
XM_043224987.1 mRNA upstream 432572 14725910 ~ 14749563 (+) False LOC122328907
XM_043224965.1 mRNA downstream 12650 15324344 ~ 15338267 (+) True ptpn22
XM_043224113.1 mRNA downstream 164029 15475723 ~ 15478611 (+) True si:ch73-206d17.1
XM_043225537.1 mRNA downstream 288958 15600652 ~ 15608453 (+) True zgc:158263
XM_043225542.1 mRNA downstream 361358 15673052 ~ 15685048 (+) True cacnb3b
XM_043225416.1 mRNA downstream 379816 15691510 ~ 15702243 (+) True rnd1b
TU233466 other upstream 185990 14992350 ~ 14996145 (+) True G157656
TU233447 other upstream 432733 14736001 ~ 14749402 (+) False LOC122328907
TU233419 other upstream 467602 14712147 ~ 14714533 (+) True LOC122328914
TU233368 other upstream 496819 14683990 ~ 14685316 (+) False LOC122328906
XR_006247782.1 other upstream 838861 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU234237 other downstream 671976 15983670 ~ 16083529 (+) True G158152
TU234236 other downstream 695950 16007644 ~ 16008846 (+) False G158152
TU234249 other downstream 710505 16022199 ~ 16023394 (+) True G158162
TU234659 other downstream 1309504 16621198 ~ 16664314 (+) True G158446
TU234708 other downstream 1419652 16731346 ~ 16731899 (+) True G158486

Expression Profile