RNA id: XM_043225463.1


Basic Information

Item Value
RNA id XM_043225463.1
length 4445
RNA type mRNA
GC content 0.41
exon number 11
gene id zbtb48
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14222809 ~ 14233051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcacttcctgtttcaacATGGCTTCTTGATGTTTAgctcaaattaaacatttgatgtGATACATTATGTAATTTACGTAGTAAGTTACGTAACGCATATATGTCGGCTTTCAgtatatgaaaaaaagatgaGAGAAGTGATTTAATTAACGCCAAAGATGGAGATACTTACTGAAGGAACTTCTCACTCTCAGCGGGTGCTGTCCTTGCTCAACCAACAGAGGGGTCTTGGCCACTTCTGTGATGCTATGTTGAGCACAGCGAGTGGACAGGTGCATCTGGCCCATCGCAATGTTCTTGCCTGCTTCAGTCACTTGTTCCAAGACCCCAGTTCGAACACTCCATGCATAAAGATTGACCTTCCATTAGAGTGCCCCGATGATGGACTAGAGCTACTACTTAACTTTTTTTACACTGGAGAACTCCAGTTAGACGACAGCAATTTAGAGaagattcagaatgcagctagCGGTCTATCAGTGCCAGATTCTCTCATATCTTTCCAGGGCTTGCCAGGTGCAGAGAATTTACAGTCGCCTGTCTTGAATGAAGATGAGAAGGACAAACCACTGTTCCCTCTCACACCTGCAGACGCTCGGCCTGATCACACCCCGAAAGGAAAAACTAGATCTTCGCAGAGGACCAAAAACAAGCCTGATGCATGCAGGGTAGGTTCAGAGGTCACAGCTAGCGATGACGACCCTGCTGCCTCGACGTCTACCACCACCACACGCTCTGGAAGGCGTGTAAAAGGGCCCAGTCGACTACTTGGGCAAAGTCCAATGTCTGCTGTGATGAGGCAGGCAGCAGGACGAAGAAAACCATCATCTCTAGAAGACAAAGAGCAGGAATCTTCTGTCGCTGAGGATAGAGATCACCACAAAAATCAAGATTTGAGTGAGACTGAGGTGGATGGATCTGTTGATAACCAAAAAGACAATGATTTAGaaaatgatgaagatgatggtggtggtgatgatgatgatgatgatgatgatgacagtGACAGAGGTGACAGTATGGATATTCTTATTGAGGGAACTGATGAGGAGTATGTGCCTCGTGATTCACCTTGCTCGACCTCAAAGACTCAGCGGGGAAAGCGCAAACGACATGAAAAAAGTACCAATAAAGAAAATGGGGAAGGAACAtctaaagacaaaaagaaaggcTCTGTCCAATGTCCAACGTGTCATAAAACATTCCTCAGCAAGTACTACCTAAAAGTACACAACAGGAGACATACAGGAGAGAAGCCCTTTGAATGTGCTAAATGTGGGAAGTGCTACTATAGAAAGGAAAACCTGTTGGAGCATGAAGCCAGAAATTGTCTTATCAGAGCAGAAGTGGTGTTTTCCTGTTCAAAATGTAACATGACCTTTAAAAAGCGACATGAGCTGCGGGTTCACAtggtcacacacacaggagagatGCCCAATAAGTGCACGTCATGCTCTGAGCAGTTCATGCAGAAGAAAGACCTCAGGATCCACATGATTAAAGTTCACGGAGCTCCCAAGCCACACGCTTGTCCGTTGTGTCCCAAGTGTTTCCTGTCCCGCACTGAGCTACGTCTGCACGAGGCAGCCAAACATCGTGGTGAgaaactgtttgtgtgtgaagaGTGCGGTCATCGGGCCTCCAGCCGCAACGGCCTGCAAATGCACATCAAAGCCATTCACAGAAATGAGCGTCCTTTTGTGTGTGAGTTCTGCAATCATGCTTTTACTCAGAAAGCTAATCTCAACATGCACCTTCGAACACAtactggagagaaacctttcCAGTGTCACCTCTGCGGCAAGACATTTCGCACACAAGCGAGTCTGGACAAACACCACCGCACGCACACAGGAGAACGGCCATATAGTTGTGAGTTTTGTGAGCAGCGCTTTACTGAGAAAGGCCCTCTCTTACGCCACATAGCCAGCAAACACCAAGAAGGTCGTCCACACTTTTGCCACATctgcaacaaaacatttaaagCCATTGAACAGCTTCGTGTTCATGTACGACGTCACAAAGGAATGAGAAAATTTGAGTGCACTGAATGTGGTTACAAGTTCACCAGACAGGCACATTTGCGGCGACACTCGCAGATCCACAACCGTGTGGAGAACTACAACCCCAGACAGAGACGCTTACGTAACCTTGTAGTGGAGGATGAGAGTGCAGTTGACTCAACTAGTCCTCCCAGCCAGGCCGAGGCTCAGGCCGGACCAGCAGACATGGTTAGCCTGGTTATCCAGCCAGAGGCGGTTGTGGTGGAACAGGTAATCTCAGCCTCCGCTGGAGGAACAGGAGGAGAGCAGGCCACATATTCAATGACTGATGGAGCAGTGAGTGGAGAACAGACTGGGATTGCTCTGGCTGGAAGGACTGATGGTGGAGTGGAGCAGACTCCGTTCACTGTAGCAGATGTGATGGAGCAGACCCTGCTGGTGACCAATGCGTACTCTATCCATCAGTCCAGTGTGGTGGTGGAACTGGACAGCTCTGCAGCTGACGAGAAGGACTAAATGAGTCCAGAGCAAAAAAGTATTtggtttaaagggttagttcgcCCAATAATGACaactctgtcattaattattcactctCATGTCTATCCAAACCCAAaaaaccttcattcatcttcttaaaacaaattaagatatttttaagaagaTCTGAGCTCTCCTACCATGATTCCTACCATGATCAAGGcacagaaaggtagtaaggacattgttaaaatagtcagtGGTCCACCTTATTTTTACAAGAATAATACTTTCAGtttgtaaggaaaaaaaaagacttaattcAGTGATTACTTCTCTTCTATAACACTTGTTTGACATTATCAACATGTGCGATTCACCTTGAGAGGAAAGCAATGTGCATGCGTCAATAACGGTGGAGCACAGAATgagaagagattaaaaaaaaggacaaaggTCTTGCGGGTTTGGAtcgacatgaggttgagtaattatTGACAGTGTTGTCGGTTTAAGGTGAACTTTCTCTTTCGACATTGTAAACAAATTGCTTTCttgtgttaatttattattaaatacagtgGACCTGGTTGTATCAAGCACGATGATACAAGATCATCTTGAGGTTTCCATATAAGTCATTTGAACTTAGCTTCTGCAAAAATGTTTAGCGGTTTTTCAGTAAGACTGTGTCTACaatcattaattaattgaaaatgtgcTTTCACTGTCTGGATGAACAGacaaaaactgaaaaggttTTTATTCTGTGAAGAAAAACTAATGAATGCATTATGCCTTTCTTATTTGTACTTGCACTTGAAGTTCCAAGATGTTTGCCAAAATGTACAATAACATGTGACCAAAGTTCTTTTAAGAGAATGTCTCTAGATTTATTCAGCATCTGGAAGGCATGATATAAATTAAAGTCTGttgtaaaacaagaaaacagtCATTAGCTTCATGTATACTCTTGTTTTAATGGAATAAACCGTTCTAATATTGTCATGATTCGAACTTGATGGAAAATTAGATATCTAACGTGAATCTGTAAATTTGGCTGCGAGACCATTTGAATCttataaattgtatttcatACAGTTTGTCTCGTGATTGTGAACTTTATAAGCACAAGAAAAGTGCAAAAAGTAACAGTGCTGGCAGTCATTTATTGGTTGACCACGCAAACAAACATTACACAAATCATTGCCTTGTCTGTAATGTACAAATGGTTTTGGCCACAAACTAAACattctgtaagaaaaaaataaaataaacatcaagtACCGTTTAAGCGTGTTGTAAATAATTAGTTTCATAAGTACTGGTATCGTCAAACACATACGTTTATTCAATAACGAGATACTGAATTACTACTTCCAGTTATTAGTACAGCATCCGAATACAATATTTGACATCCATTCCTCGTGTTTTCTTCATGATCGCAGGCGGTTTAATAAACAAGCTGTTTCTCGTAAACTAACACCTTCCTCTAAAATAAACTATGACtacataataaatttaatattaaaatatgagttGAAAAGCAAGTCGGAtacaaattcacaaaaaatgtgATCACTGCATGCACGCTAGATtgtctgaaatataaaattctagtaaaatgaatattaaacaatggGTTGCAATGGGTGCTGGGACACAGTTGTTTATCTGTTGTcttgtttttggaaaatctCGAATTCtcctaaataattaattttagacttttaactgtatataaaataacatttgttatCCACATTGCAGAATACgttataaacatgcatatacacaccaAATTTTCACCTTTTGGAATGATTGGGtctcaaaattatattttttaagaaacaatttTACTTCACATTAAGGTTATGgccttatattatattaaattttttgtctATGTTGACTTGAATGTTGCAAATCACTTTAGGAGATCCATGCtgaattaaacaattaa

Function

GO: NA

KEGG:

id description
K10519 ZBTB48, HKR3; zinc finger and BTB domain-containing protein 48

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233789 lncRNA downstream 80658 14143662 ~ 14143930 (-) True G157875
TU233788 lncRNA downstream 82420 14141939 ~ 14142168 (-) True G157874
TU233774 lncRNA downstream 148651 14057837 ~ 14075937 (-) True G157863
TU233703 lncRNA downstream 398999 13823993 ~ 13825589 (-) True G157826
TU233679 lncRNA downstream 451280 13772775 ~ 13773308 (-) True G157813
TU233794 lncRNA upstream 3301 14236352 ~ 14237014 (-) True G157880
TU233804 lncRNA upstream 9530 14242581 ~ 14243955 (-) True G157885
TU233829 lncRNA upstream 69821 14302872 ~ 14343270 (-) True G157901
TU233833 lncRNA upstream 91665 14324716 ~ 14325647 (-) True G157905
TU233839 lncRNA upstream 93333 14326384 ~ 14391551 (-) False G157906
XM_043225302.1 mRNA downstream 27901 14150523 ~ 14196687 (-) True syt6a
XM_043224788.1 mRNA downstream 120362 14100397 ~ 14104226 (-) True sdf4
XM_043224794.1 mRNA downstream 130152 14085586 ~ 14094436 (-) True ctdsp2
XM_043224173.1 mRNA downstream 184510 14031726 ~ 14040078 (-) True tmem240a
XM_043224172.1 mRNA downstream 184512 14031726 ~ 14040076 (-) False tmem240a
XM_043225081.1 mRNA upstream 24799 14257850 ~ 14272460 (-) True avpr2aa
XM_043224951.1 mRNA upstream 53910 14286961 ~ 14293566 (-) True idh3g
XM_043224624.1 mRNA upstream 195921 14428972 ~ 14524636 (-) False lrp1ab
XM_043224623.1 mRNA upstream 195921 14428972 ~ 14524636 (-) True lrp1ab
XM_043225371.1 mRNA upstream 321763 14554814 ~ 14563800 (-) True senp1
TU233040 other downstream 942261 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1007180 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2299938 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2422956 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2479193 11745262 ~ 11745395 (-) True LOC122329329
TU233846 other upstream 93915 14326966 ~ 14330784 (-) True G157909
TU233895 other upstream 348043 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1114366 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1466218 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1466218 15699269 ~ 15717250 (-) False LOC122329227

Expression Profile