RNA id: TU233829



Basic Information


Item Value
RNA id TU233829
length 1158
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G157901
representative True

Chromosome Information


Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14302872 ~ 14343270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGTTTAACATTTggtgtttatttttgattagttacaaaacataaatagaATCAACAGTTGAATTAGTTACAATTTACAGTAGCTAAAATCACCAGCAATAAGTTTAGTCCCCTAtagattattttcatttaaataacctTTAATTATTGGTGGTCAGTCAAGTAATTCTGAGACCCCCCGGTTCTTCTGTACAGCTTCACCCACACTTATACCTccactgtaaaaatgatttggCTTCTAACATTCCCAATCACTAGCTCTGAATTTAAACCCCTCTAAAAATCAAATCTATATATCATTGTAATGTTTGAACTGACTTTTGGAGTAAAGTTGGAAGCCAGGGGAACTCAAGAAACCGTTTCAGGACCTGTGTCTTATCAGATAACCACAGCTTTCTCAACACTGATCAGtacagaattttacattttttacaacccttttcaaaatacaaaaataacgcTTTCTTTTTAAGATtacattttggtaacacttcagcAGAGGGTCATCTTTACATTTCCCCATTTGTGCAGATCAAATGGATAATGTCTGGAGTTTTCTTAGACACGACAGCCTTCTGACTCACCACCACTGTACTGTTGGTTTACCGTGAAGAGGTGGGTCTTTGTCTTTAGAAAAGTGACACGAAATACTGGAAACTGAATGATCGCCACCCTCCGTAGGCAGCGGTCACGTTGACCTCTTTTTGTAACATCCACGAGTTCAAGCATTAGCACAAGTTAAAAAGCTTCACAACACAAACCGGTTCCTCGTTCCCAGTGCACCTTACACAATACATTCCACCCTGTCTATCTCTCACCTacttcttggaaaaaaaatgcaggttGCCTCATTCGTACTAACCTTCCGTTACTTTTCCCAACAAAACACTGAAGACCACAGTCGGGGTTTCTGTATATGGGCATTGCAGACTTATGAAGAACGCATTCTGACAACGGCAAGCAGTCAGGCTATACAACAAGAGTTGTGTAGCTGCTGATTTAAAGGCTGGGCTCTGATATCTGAATCACATAAAAGCTTTATGATCAGGAAAAATACACTGTAGAAAGGCAACCTATTTGTGGATTTTCTCCCAAACTTGCTTGGCAGTTATATctacgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU233804 lncRNA downstream 58917 14242581 ~ 14243955 (-) True G157885
TU233794 lncRNA downstream 65858 14236352 ~ 14237014 (-) True G157880
TU233765 lncRNA downstream 77478 14222809 ~ 14225394 (-) False zbtb48
TU233789 lncRNA downstream 158942 14143662 ~ 14143930 (-) True G157875
TU233788 lncRNA downstream 160704 14141939 ~ 14142168 (-) True G157874
TU233853 lncRNA upstream 13770 14357040 ~ 14359030 (-) True G157915
TU233835 lncRNA upstream 17896 14361166 ~ 14418295 (-) True G157906
TU233861 lncRNA upstream 23289 14366559 ~ 14367629 (-) True G157920
TU233836 lncRNA upstream 30450 14373720 ~ 14397843 (-) False G157906
TU233838 lncRNA upstream 30450 14373720 ~ 14461017 (-) False G157906
XM_043224951.1 mRNA downstream 9306 14286961 ~ 14293566 (-) True idh3g
XM_043225081.1 mRNA downstream 30412 14257850 ~ 14272460 (-) True avpr2aa
XM_043225463.1 mRNA downstream 69821 14224588 ~ 14233051 (-) True zbtb48
XM_043225302.1 mRNA downstream 106185 14150523 ~ 14196687 (-) True syt6a
XM_043224788.1 mRNA downstream 198646 14100397 ~ 14104226 (-) True sdf4
XM_043224624.1 mRNA upstream 85702 14428972 ~ 14524636 (-) False lrp1ab
XM_043224623.1 mRNA upstream 85702 14428972 ~ 14524636 (-) True lrp1ab
XM_043225371.1 mRNA upstream 211544 14554814 ~ 14563800 (-) True senp1
XM_043224161.1 mRNA upstream 221194 14564464 ~ 14569658 (-) True LOC122328465
XM_043224258.1 mRNA upstream 227077 14570347 ~ 14589622 (-) False fitm2
TU233040 other downstream 1020545 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1085464 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2378222 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2501240 11799922 ~ 11801632 (-) False si:dkey-93l1.9
XR_006247899.1 other downstream 2557477 11745262 ~ 11745395 (-) True LOC122329329
TU233895 other upstream 237824 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1004147 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1355999 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1355999 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1664836 16008106 ~ 16008915 (-) True G158231

Expression Profile