RNA id: TU233846


Basic Information

Item Value
RNA id TU233846
length 3363
RNA type TUCP
GC content 0.48
exon number 2
gene id G157909
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14326966 ~ 14330784 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATTTAGGCTCTCCTATTAAGCCAGAGCAATGCAGCGTCACTTTCTGTCAGCGAGGTGGTGGGCAACACAGATCCATTAGAGTCATGGGACTGTAAAGCACTCACAGTAGGAGGGGAAGAGGGGATCATATCGGCAGGCCTTGCCTGGGTTAGCTGTGCCTCTACTGTAACAGGAATTTCTGAAACTGGGACAGATGGTTTTAGGGCTGGGAGTGTGGCAGGCGGCTGTAGGGAAGTATGAGATGGACTTGGGGGGATCTGTGATGGAATAAAGGCAGTTTGGGAGTAAGGAGGTTGCTCAAAACTCCCAGTAGCCTCTACATGGGTCTGTACCTGTGCATTTGAGTGTGATTGTGATTGCATGCTAGTCTGTGTGTGCACTTGAGTGGGAAGTGTTGGTTTCTGCTGGTTCTGTGGGGAGGGTGGTGGTCCTGAAACCACCTGACTATACAGTGGTACTGTTCTAGCTTGGGTTTGAGGTACCTGACTGGGTGAAATATGAATTGGGAGCATATGTTGGAGCACTGGTTGACTCTGACTAGGTTGTTGGTGGAGATCTTGCTGTAGGACAGCATTCGGTTGCAAAAGCTGCTGCACAGGTTGGGCCTGATGCTGATGGTGCAGGGGTTGTTGTTGCTGAACATGTTGGGTTTGTGGCAGCTGCTGTTCATATGGTTGCGTAGCCTGAGGTTGTACAGGAGGAATGGGCTGCAAAACTGTCTGCATCGAGGGCACACTGATTGGTTGCTGCTGAGCTTGGATAACTTGCGGAGCCTGGGTCTGCATTTGAGATTGGTTTGTCTGTTGTAAAAAGCACTGCGTGGATGAAGTGGCCATTGGGTTGATGGTAGGTGCAAGTGACACAGGAGACAGTACTGCTTGCTGATATTGCTGCAGAGGTGGCTGTTGTTTCACAGATTGTGTGAGGTCTAGCTGAACAGGCTGGATGTTTTGTGAAGCGACAGGTGCTTGAGCATATTGTGGGGGTAAAAGTGTAGAAGCAGCTGGGACTGTAGCATGCACAAGAGGAGCAGGGGTAGTTGATCCTACTGCAACTtgacactggagagaagccgcAGCTTGAGGTGGTACCAACTGAGATTGGGATGGAAGAGTTTGCCCTTGTGAGACCATTTGTGTTGGAGTTGGGATAAAAGAATGAATGGGTTGTGGTGTAGGAACTTGTGTTGGAGATGTGATTTGTTGAGTTGCTTGTGGAACTTGTAGTGGGCCTGATTGAATATGGCCTCCTATTGTCTGGGGTGCAGGATGACTTTGAGACTGCAAGGGAATCTGACAATAAATCGCAGGCTCCCCTTGACTTTGGATCTGAACTTGCGTTGAAGGTTGAGCAGACATCTGTGGTGGTACCTGCTGCTGAATGAGTACTGGGGCTGGGACTTGACTAGGTATTTGAGCGCTAACCATTTTTGGTACTGTTTGAACCAAGGTTGGAACTTGCAACTCTACCAGAGATGGTCTGTGTGATGCCTGGGGGAGGACAGCTTGTTGCTGTTGAATCAAAACATGCTGCTGCTCAGTTTGTTGTTGAGCAAGATGAGGTTGTGGGGGAAGCATTTGTTGAGAGTGCTGGATTTGACTAATCTGCTGGATCGTCTCTGGAGGCTGAGTTTTCACTAGGGTTGCTTGCTGTTGTCCGCTATGATCTGCCAGAGGAGCACGTTGCTCCAAATGTTGCTGCTGTAATAAAActtgttgcagttgtttttcGGATATTTGCCGCTGTAATTCAATCTGATGTTGTTGCATTAAGAGATGTTGCTGCATCTGTGACTCTCTTTGCTGTAGCAatgtttgttgttgctgttcGGTCTGTTGTTGAAATATCTGCTGTTGCAATTGTTGATCTGCCGGCTTCTGTAGTTGCAGCTGTTGCTGAAGAACATGTTGCTCTATCTGCTGAGACTGCTGCTGGCTTAATAAAGTTTGCTGCTGTTCGATTTGTTGCTGCTGTTGCAGCTGCAGTACTTTTTGCTctaactgctgctgctgctgaatgagcgcttgttgctgctgctgttgcaatAGAGCTTGCTGTTGCTCgagctgttgttgttgctgctgctgtttaaaCAAagcctgctgctgctgttctAACTGTTGCTGATGTAAAATagcttgttgttgttttaatttgagttGCTGCTGTTGCTGTATCAAAGCTTGCTGTTCCAATTGTTGCTGCTGCAGAAGAGCCTGTTGTTGttcgcgctgctgctgctgaagtaATGCTTGTTGTTGCTCCAATTGCTGTTGCTGAAACAAAGCCTGTTGCTGTTGTCTTTGCTGTTCCACCTGTTGCTGTAAAATCGCCTTTTGCTGCTGTTCTATTTGCTTTTGTTGATGTAATGCCTGTTGCTGCTGCTCAATCTGTTGCTGTACCGCCAAGTTTTGTTGTTGCTGCAAGAGAATTTGCTGCTGCTCAACTTGCTGCTGTTGTGGTGGCTGAATATAAActtgctgttgttgtttctcCATTTGACTTTGCAAAACAGCTTTCTGTTGCTGCTCCATTTGTTGCCTAATCAGAAGTTGCTGTTGTTGTCTCTCCGTCAATTGCAATGGCTGCTGGATTGTTTGAAGCACCGGTGGCTGTTGTACCAAAGCTTTTACCATGTTCTGCTCCTGTGATTCAGACATTTGTTGCAAATACACTTGCTGTGCCTGCTGTTGCGGAGTCTGATGCTGATATTGTTCCACTGGGGGTTGTTGTACTGAAGCCTGATGTTGCTGTATTACAACTTGCTGTTGGGGTTTGGTTGCAGGTTGTTGCATGTACACCTGTTGTAGATCACTTTGCTGAGGGTTGGTCATTGTTTGCTGTTTCTGCTGTGGCAATGGGATATATGGCTGCTGAGATGCACTAGAATGTGGCGGCTGTTCCTGCAGAACCACCTGGGGTTTTTCTACATGCTGTGGCTGTTGTAACAAAACCGTCATTTGCTGAACATGGTCTGTTTGCTGTGGCAACAACACCGTCTGGTGCTGCTGTATTATATTTGCCTGCTTTTGTGGTGTTGGTTGCTGGATGTTAAGTTGCAATGTTGCGGGCAATTCTGACATCACCTGCTGTTGCGTCTGAACAATAGTTTTCTGGGGCAAAACATCAGTGGGTTGTACCGAAGCAATAGTAGTTTGGGTTTGCAAAGGTGTCATTATTTTGCCTGCTGATGCTATAGGTTCTCCAGCCGGGATGGAGGAAGTGAGGACAGTCATGGGTGCCTGGGGTGATACAGGGGGGATGTATGACTGTGACTGTGCAAGAGAAGTGTGGGGAGTGGAGGCATCAGTGGATCGGGAGTGTAACATCTGCGAGGATGTAACATCTGTTGAGTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233833 lncRNA downstream 1319 14324716 ~ 14325647 (-) True G157905
TU233804 lncRNA downstream 83011 14242581 ~ 14243955 (-) True G157885
TU233794 lncRNA downstream 89952 14236352 ~ 14237014 (-) True G157880
TU233765 lncRNA downstream 101572 14222809 ~ 14225394 (-) False zbtb48
TU233789 lncRNA downstream 183036 14143662 ~ 14143930 (-) True G157875
TU233853 lncRNA upstream 26256 14357040 ~ 14359030 (-) True G157915
TU233835 lncRNA upstream 30382 14361166 ~ 14418295 (-) True G157906
TU233861 lncRNA upstream 35775 14366559 ~ 14367629 (-) True G157920
TU233836 lncRNA upstream 42936 14373720 ~ 14397843 (-) False G157906
TU233838 lncRNA upstream 42936 14373720 ~ 14461017 (-) False G157906
XM_043224951.1 mRNA downstream 33400 14286961 ~ 14293566 (-) True idh3g
XM_043225081.1 mRNA downstream 54506 14257850 ~ 14272460 (-) True avpr2aa
XM_043225463.1 mRNA downstream 93915 14224588 ~ 14233051 (-) True zbtb48
XM_043225302.1 mRNA downstream 130279 14150523 ~ 14196687 (-) True syt6a
XM_043224788.1 mRNA downstream 222740 14100397 ~ 14104226 (-) True sdf4
XM_043224624.1 mRNA upstream 98188 14428972 ~ 14524636 (-) False lrp1ab
XM_043224623.1 mRNA upstream 98188 14428972 ~ 14524636 (-) True lrp1ab
XM_043225371.1 mRNA upstream 224030 14554814 ~ 14563800 (-) True senp1
XM_043224161.1 mRNA upstream 233680 14564464 ~ 14569658 (-) True LOC122328465
XM_043224258.1 mRNA upstream 239563 14570347 ~ 14589622 (-) False fitm2
TU233040 other downstream 1044639 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1109558 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2402316 11922844 ~ 11924650 (-) True G156985
XR_006247884.1 other downstream 2525334 11799922 ~ 11801632 (-) False si:dkey-93l1.9
TU232418 other downstream 2580346 11744119 ~ 11746620 (-) False LOC122328546
TU233895 other upstream 250310 14581094 ~ 14589593 (-) True fitm2
XR_006247853.1 other upstream 1016633 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1368485 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1368485 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1677322 16008106 ~ 16008915 (-) True G158231

Expression Profile