RNA id: TU233980


Basic Information

Item Value
RNA id TU233980
length 4459
lncRNA type sense_over
GC content 0.36
exon number 4
gene id LOC122328902
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14684890 ~ 15301682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTTTCAGGGATCTAAgtataaaaatcataaacactttcaaataatttttcatattacTTAGTAATTATAGTGGCTATATACGTATTGCTCTAAATTAAGTGGGAATATGTCTTCTGATCTGTCAGtagaaataatgtaatattcttGTCTCAAAGGTAAAATTAAAGGtctaaatttatttgaattgtatGATTCACAACACATTCACTAACATGCATAGGCACACGGGTCCGCATGAAATAtgtgttcaaatgtttttagaaacaaATCATGATTCAGAAGTAGCATTACTACTAACACACTACATTGGATtctgaattttaaatgtatggcATACATTAACATCAGAAAGCTTATGCAGTGCAATGAGGCTGACACTTTTAATAAGTTCTTTTGTGTGTAGAAATTCACTCCAAACAGTTATTGGTTACTTataaagcagcttcacagacCCTCCACAATTGCGACAGTGGCAAGATGTAGTTATGGAAACCCTCACCTTGTACACATTTATACAgcaaaattttgtcattaaaccCCATGTCGTTCCTAACCCATAAAACCTTTGCTCATCTTCAGAATACAATTTAAGGTGAAAACCGGGACGCTTGTGACAGAGAAGTATGAGAGATATGGTCTGAAAATCAGTGGTTCAGCCGTAATAATATGAAGCTGCGAGAATACCTTTTGTTTGgaaagaatacaaaaacattatttatttaaagattggTAACATCACTGTAGCCCACATTACGGATGCAGTTCTTTGTTAGATGCAATGGAAATGTATAGGTACTTGTGCTTTGAATCGTACAAACAGCGTGTCTTTCCATTACATCTCACACAGAGCAGTCACAAACCTTCTGGTTTTTTATCACAAATATCTGAAATTGTGTTCTAAAGACTAACACCGCTTTCACCGGATTTAAACAACATGGGGTAAGCGATGACACAATTTTGATTTTGGTGCAATATCCTTTAACTGAGTTAAAGGTTTATTTtgccattgtgttttttgttttttgtttttttccttagaTCAGAGACATGAGCTGTTGCCTGTACTTTACTCTGTATCATTACCATTAAAACGTTAACTCTTAACATCTATTAACCTCAAGAATAAATACACTAATATCATAGAATGCTGCACAGTGTTGTTTTATCAGTTTGGCCattattttatcagtttacATAATGTCAGTTTTACTGCAGAAAGATTCTTGTTTCTCTTTCTAATCACATCTTAATGTTATAATCTTTTCTAACGGGTCTGTTAGGGGAACACTCTTTTCCTTAGCATGAAAGATTCATCATATAGCTGTATAATTGTATaccttttacctttttttccattttgatttttAAGGGTTATCTGTGTTTtccatatatttgtatttgaatcTGCAATCTGAATTTTACTCTTTCTGTCTCCTAactgtattctttttttattccacagGCGAGAGCACTCCAGTTTATGctATAGTGATTGGTGTCATCTTTGCAGTGGGTTTGTGTATTCTCATTGTTTGCTGCTGTTTATGTAAACGGTCTTCAGAAAGTTGTCCTGAATAAAATCCCAATGAAGAATCCTGCAAACATATGTAccctgtatatacacacacttccCAGAATCCAGCACGAAGCAAGCTGCAGCAAATTTCTCCATAATCAGACTCgttgttgctttaaaaatgccAGCTTCATGCGAAATAACTCCTTCTTTACTCCAGAAACTCAGTCTTCACATAAGTCAGGTTGAATTCACTTTTATAAAGTGTATGCTTGTGATTTCTTGACAGTTGTTGATGTAGAGATCACTCATTAATAACAACGTTCCTCTTCTTGAGATCATTTAAGGCAAGAAGTGCACTGGGAGCCCCTTCCCTCACTGATTCAGTTGAGGGCTAGATTTATCACGATTATTTATGTAGAAAGAACATTTAAGAGATGGATGTCTGAATTTTGTAATTGCATAATATTTGTGAatccacgttttttttttccacgagGTTTTTTGGTTTTGCCTGTTACTTTGCATTTGTTCCAGTAAATGTAGTACAGAAAGTGATTGGCGGTGCAGATTTTAAAGGAAAgttctgtttatttctgctgaagTGCATAAAGtgcctttttggtttttaagtGTTTGTCTGAGGTTTTGTATAGGTTCTAATtgcattagaaatgttttgcgGTCTCGATTTTTAcgttaataaagaaaaactttagTATGATAAGTCATTTACTTTTGTCTGCTTTAAGACCAAATACATACAGAGGCCTAATTGCCTTTTGttactgcttatttattttttcccctattTGGAAAAGTTTGCTCTAAAATATTGGAAAgtattaatatcttaatatttgaccattttttttttaattggtcaTAGTAATTTTTCCCCAgaagtgttttcttttgtgtgtgtgtgtgtacacgtgtACTGATTGGCTGTCTTGGTTATTTAACTTTTGTTAGCTTTAAACTTTTCAGCATTCTCAAAGATGTATCATATTCTATTGTTGTGGTGTTTGAAATGGTTTTGAACCACTACATTTGTGCCATGCTAATTTAATGCACTGGCATAACTTGATTTCCAGAATAAGCACTGTCGCAAAGTTGATCAAATATAAATCAACCTTTATGATTCTGTCTTTCATTGAGATGTCTGTGTGCCTGAAAGgactcaaaataaaagctatcaAAACAGAACAGTTGGGTTCATAACTGACATTtgtccattttattttagttcttgGATATTTGCAGACCTGAGCACTGATTCTGTTTGACACACAGTGTTATTGTGGAATTAGGTTTTGCTCTATCACTAGATGCATTTCATATTCAACCAGTACAGCTGCTTTCTGTATCACAAGGTTTCCAATAAACCACGTTCAGTTCACCGCGTTACATTTCCTCTATTACATAACAAGGAACAATCAGTTTAGTTGTTCAATtatttcaatagaaaaaaactgttcatgactatttcatttacaaagcatgtcaaacaaaaacatgaatccTACTGCACATGGTATATTTTGAACAGACAATATCGCACCAATgagtttttttaacatatatacagCGACTTCAATTAACAATTGTACAGACAACAGCAAAATTATGGcaagttttactgtaattacagATTTGTTAAACCATTCATTCTTTGGGGCATCACAaatgaaatcaaacattttaaccATTGAAGACATGTGAACGTACTTTTGGCACTTTTATTAGTCTAATAACCAAAAACTTTAATGacttaatttagaatttttcatTCTCCATGCAGTGACTGGTCCATAGGCACTTAAATTGTACATTTGGCATAATTAAATATTGGCAACCTTTAAACTTACAACTACACAAACATGTACAAATCCAGTAAAATATGAGAAGCAAACCACCAGATTTATAAGGAGAAGATAAATAACAGTAGTCCAAACAGGATGTTCCAATGCAAAACATGTCAAAAAATATTCCATTCATAGagaaatatgcatgtgtactgaAATGCATAGGTTCAACACTTTTTGCAGCATTAATTAATGTAGACCGATGTAAAATGTCTAATATTCAGTGCTACTTATATGCATCTATGTAAGAAAAATGCTGCAAAAgaatagtttagttttagttagtgCATTTGATTGCATAGAACCCTAATGTAAagtgttaattaaataattacaagtGTAGAAAAGGAGAGATGAAAATTTCACCACCTTCTACGTgacatcaaaatacatttaaaaatatgatttgccTTTGAACATACatactcaagaaaaaaaaaattcaatagtCAAGCTAGATCCATAAATTCCTGATTTCCAACCATCAGTTTTGCCATACATACAAATCAAGcgtatttttacctttttgacAACATGACAGTTTTTGGCTGAAGTCACTCACTCTGAGGCACTGAAATCGCTGGCCCTTTCGGGTCATCAAAGCGGTCCATGGTGCGGCTGCATGATCATGTGCAGGCCGTGAGGTAAGAATGAGCACCATGAGTAGAGAGGTCAGCAGGCCCATCCAAATCGCCGGAGTGAAGAATCCCGCACAGTCGCTGGCATACGAGAAGTCTTCACCGCTAACGCCGAAGCCTTGGATCTGTGGGAAACAATGTGGACTTTTTGCGGTATACTGTATATGATTCCCGTTTAACAGAGCATTGATAGAGTACCTGGAAATCATTGAAAGACAGCGTCCACAGGGTAGCGTTGTCCGTAGCGCTTCGAGGCACCAGCAGGGGGCTCTGAGCGCTGCTCACGCTCTGGCAGTGGAAAGAATACTCCGCAGGAGAGTAGATCCCGCCGCTGGCATTAAAGATGGCTCTCTGCCCGTCGTACTCCAGCTCCACCTGCTCCATCACCGACCAGTCGCGAGCAGACACGGGGAAGAAGATCTTGCGCATAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233838 lncRNA downstream 223873 14373720 ~ 14461017 (-) False G157906
TU233871 lncRNA downstream 241439 14383738 ~ 14443451 (-) True G157928
TU233835 lncRNA downstream 266595 14361166 ~ 14418295 (-) True G157906
TU233836 lncRNA downstream 287047 14373720 ~ 14397843 (-) False G157906
TU233861 lncRNA downstream 317261 14366559 ~ 14367629 (-) True G157920
XR_006247854.1 lncRNA upstream 138949 14830264 ~ 14830849 (-) True LOC122328920
TU234007 lncRNA upstream 145046 14836361 ~ 14845678 (-) True G157999
TU234018 lncRNA upstream 355858 15047173 ~ 15048287 (-) False LOC122328913
TU233960 lncRNA upstream 472486 15163801 ~ 15301682 (-) False LOC122328902
XR_006247855.1 lncRNA upstream 496833 15188148 ~ 15189638 (-) True LOC122328921
XM_043224382.1 mRNA downstream 5659 14672277 ~ 14679231 (-) True gdi1
XM_043224383.1 mRNA downstream 5660 14672277 ~ 14679230 (-) False gdi1
XM_043224565.1 mRNA downstream 48565 14624253 ~ 14636325 (-) True ada
XM_043224258.1 mRNA downstream 95268 14570347 ~ 14589622 (-) False fitm2
XM_043224257.1 mRNA downstream 105325 14570347 ~ 14579565 (-) False fitm2
XM_043225338.1 mRNA upstream 26430 14717745 ~ 14724225 (-) True LOC122329128
XM_043225000.1 mRNA upstream 80776 14772091 ~ 14808777 (-) True LOC122328919
XM_043224968.1 mRNA upstream 214521 14905836 ~ 14933006 (-) True LOC122328901
XM_043224996.1 mRNA upstream 355837 15047152 ~ 15048344 (-) True LOC122328913
XM_043224998.1 mRNA upstream 358051 15049366 ~ 15073882 (-) True LOC122328916
TU233895 other downstream 95297 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 354106 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1402563 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1467482 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2760240 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 656102 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 1007954 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 1007954 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 1316791 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 1452518 16143833 ~ 16169834 (-) True G158288

Expression Profile