RNA id: XM_043224972.1


Basic Information

Item Value
RNA id XM_043224972.1
length 4053
RNA type mRNA
GC content 0.37
exon number 17
gene id LOC122328902
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14684890 ~ 15301682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTGCGCTGCGTGCGTTAACCTGTCTTTTTTATCGCAACGAATATCCTTATAAGAAGATCAAATAAAGCTTCGTTGATTAGTTGAAGcAGCGGAAGAGTAACCCGTTGGCCTCGTTTGGAGCTGTTATTCACCGAGTTAAGCAAGATGGGACGTAAGGTGCTGCGTCCCAGTGTTGCCCTTCTCGCTTTTCTTACGATCTGTCAACATGTCCGAGcGGAATGCACGCAGCCTTCTTTTGCATCACAAAATGTGCAAACGGAAGATTTTCTTTTGAGTTTCTCAGATGGATCCACTGTAACATTTGGTTGCATTCTTGGACACAAGCCACTTGACTCAAAAAGTTCTAAAACAGTTACCTGTCAGGGAACCCAGTGGACAAATCTAGAACTCAGCTGCATAAaaaaatcCTGTGGGAGCCTTGCAGATATTACCAATgggaaatatgaaatgaatggaaatttATTTGGTGATACAGCTAAAGTAGTTTGTGACAAAGGATACGTCTTAGAGAGTCAGGGATCAATAAGAACATGCAGAGCTGATGGATGGGATGGCCGAGACCCTTCCTGTGAAGtGGTGAAATGTACAGCCCCTCCATCCATAGATAATGGACGACTTAAAGATGAGCCATTGGAAAGTTATGCATATTTAGAAACAGTCTCTTATACATGTAATGGAGGACTTAATCTTATAGGACCAGCATCAATTTATTGTTCTGAGGATGGAACATTTAAACCAGATCCACCAAAATGTTTTGatgGGTGTCCAGTTCCTATAATTGCAAATTCAAAAAGAGTCAAGGGAAAGTCACCTCCGTACAAACTGGGTAACTTTGTAGAATACAGTTGTGAAAATGACTATACAATGAAAGGAGACGGTTATATTGTGTGTAGAGAAAATGGCTGGGACCCTGAAGTACCAAAGTGCATTGCGCCTTGTACTGCACCTGTTTTAAGTGACCAACTCACATTAACACCGCAATCCCTCTCAAAAACTTTCCCACATGGatccaaagtgacagtaaagtgtATTGATGGATATAAGCCAAATGGTACAACATCTCAGTCAATCACCTGTGAGGAAACCAAGTGGACAAAAGTAACCCAGACCTGCATAGCACCTTGTACTGCACCTGTTTTAAGTGACCAACTCACATTAACAAAGGAATTCCTCTCAAGTAAAACTTTCCCACATGGatccaaagtgacagtaaagtgtATTGATGGATATAAGCCAAATGGTACAACATCTCAGTCAATCACCTGTGAGGAAACCAAGTGGACAAAAGTAACCCAGACCTGCATAGCGCCTTGTAGTTTgcccattttaaatgaacatgtcACTTTAGCAGAGGCTTTCCGCTCACAAAAAAATTTCCCACATGGATCCAAAGTAACAGTGGAGTGTATTCATGGATATAAGGCGAATAACACAGTAGAGCCTCAGTCAATTACTTGTGAGGAAACCAAGTGGACAAAATCACCCCTGACCTGCATAGCGCCTTGTAGTTTGcccaatttaaataaacatgtaactTTAGCAAAAGCTTTCAGCTCCCAAAACATTTTCCCACATGGATCCAAAGTAACAGTGGAGTGTATTCATGGATATAAGGCGAATAACACAGTAGAGCCTCAGTCAATTACTTGTGAGGAAACCAAGTGGACAAAATCACTCCTGACCTGCATAGCGCCTTGTAGTTTGcccaatttaaataaacatgtaactTTAGCAAAAGCTTTCAGCTCCCAAAACATTTTCCCACATGGATCCAAAGTAACAGTGGAGTGTATTCATGGATATAAGGCGAATAACACAGTAGAGCCTCAGTCAATTACTTGTGAGGAAACCAAGTGGACAAAATCACTCCTGACCTGCATAGGCGAGAGCACTCCAGTTTATGctATAGTGATTGGTGTCATCTTTGCAGTGGGTTTGTGTATTCTCATTGTTTGCTGCTGTTTATGTAAACGCTCAAAACGGCAGTGTTCTCACAAGGTGCCAACTAATAATGCAGATGATGTTTTATAACACCCTCACATATGTGGTCTTCAGAAAGTTGTCCTGAATAAAATCCCAATGAAGAATCCTGCAAACATATGTAccctgtatatacacacacttccCAGAATCCAGCACGAAGCAAGCTGCAGCAAATTTCTCCATAATCAGACTCgttgttgctttaaaaatgccAGCTTCATGCGAAATAACTCCTTCTTTACTCCAGAAACTCAGTCTTCACATAAGTCAGGTTGAATTCACTTTTATAAAGTGTATGCTTGTGATTTCTTGACAGTTGTTGATGTAGAGATCACTCATTAATAACAACGTTCCTCTTCTTGAGATCATTTAAGGCAAGAAGTGCACTGGGAGCCCCTTCCCTCACTGATTCAGTTGAGGGCTAGATTTATCACGATTATTTATGTAGAAAGAACATTTAAGAGATGGATGTCTGAATTTTGTAATTGCATAATATTTGTGAatccacgttttttttttccacgagGTTTTTTGGTTTTGCCTGTTACTTTGCATTTGTTCCAGTAAATGTAGTACAGAAAGTGATTGGCGGTGCAGATTTTAAAGGAAAgttctgtttatttctgctgaagTGCATAAAGtgcctttttggtttttaagtGTTTGTCTGAGGTTTTGTATAGGTTCTAATtgcattagaaatgttttgcgGTCTCGATTTTTAcgttaataaagaaaaactttagTATGATAAGTCATTTACTTTTGTCTGCTTTAAGACCAAATACATACAGAGGCCTAATTGCCTTTTGttactgcttatttattttttcccctattTGGAAAAGTTTGCTCTAAAATATTGGAAAgtattaatatcttaatatttgaccattttttttttaattggtcaTAGTAATTTTTCCCCAgaagtgttttcttttgtgtgtgtgtgtgtacacgtgtACTGATTGGCTGTCTTGGTTATTTAACTTTTGTTAGCTTTAAACTTTTCAGCATTCTCAAAGATGTATCATATTCTATTGTTGTGGTGTTTGAAATGGTTTTGAACCACTACATTTGTGCCATGCTAATTTAATGCACTGGCATAACTTGATTTCCAGAATAAGCACTGTCGCAAAGTTGATCAAATATAAATCAACCTTTATGATTCTGTCTTTCATTGAGATGTCTGTGTGCCTGAAAGgactcaaaataaaagctatcaAAACAGAACAGTTGGGTTCATAACTGACATTtgtccattttattttagttcttgGATATTTGCAGACCTGAGCACTGATTCTGTTTGACACACAGTGTTATTGTGGAATTAGGTTTTGCTCTATCACTAGATGCATTTCATATTCAACCAGTACAGCTGCTTTCTGTATCACAAGGTTTCCAATAAACCACGTTCAGTTCACCGCGTTACATTTCCTCTATTACATAACAAGGAACAATCAGTTTAGTTGTTCAATtatttcaatagaaaaaaactgttcatgactatttcatttacaaagcatgtcaaacaaaaacatgaatccTACTGCACATGGTATATTTTGAACAGACAATATCGCACCAATgagtttttttaacatatatacagCGACTTCAATTAACAATTGTACAGACAACAGCAAAATTATGGcaagttttactgtaattacagATTTGTTAAACCATTCATTCTTTGGGGCATCACAaatgaaatcaaacattttaaccATTGAAGACATGTGAACGTACTTTTGGCACTTTTATTAGTCTAATAACCAAAAACTTTAATGacttaatttagaatttttcatTCTCCATGCAGTGACTGGTCCATAGGCACTTAAATTGTACATTTGGCATAATTAAATATTGGCAACCTTTAAACTTACAACTACACAAACATGTACAAATCCAGTAAAATATGAGAAGCAAACCACCAGATTTATAAGGAGAAGATAAATAACAGTAGTCCAAACAGGATGTTCCAATGCAAAACATGTCAAAAAATATTCCATTCATAGagaaatatgcatgtgtactgaAATGCATAGGTTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233838 lncRNA downstream 224774 14373720 ~ 14461017 (-) False G157906
TU233871 lncRNA downstream 242340 14383738 ~ 14443451 (-) True G157928
TU233835 lncRNA downstream 267496 14361166 ~ 14418295 (-) True G157906
TU233836 lncRNA downstream 287948 14373720 ~ 14397843 (-) False G157906
TU233861 lncRNA downstream 318162 14366559 ~ 14367629 (-) True G157920
XR_006247855.1 lncRNA upstream 3439 15188148 ~ 15189638 (-) True LOC122328921
TU234028 lncRNA upstream 17657 15202366 ~ 15203950 (-) True G158014
TU233990 lncRNA upstream 25519 15210228 ~ 15338843 (-) True G157984
TU234037 lncRNA upstream 111179 15295888 ~ 15296636 (-) True G158019
TU234059 lncRNA upstream 291778 15476487 ~ 15477769 (-) True G158024
XM_043224382.1 mRNA downstream 6560 14672277 ~ 14679231 (-) True gdi1
XM_043224383.1 mRNA downstream 6561 14672277 ~ 14679230 (-) False gdi1
XM_043224565.1 mRNA downstream 49466 14624253 ~ 14636325 (-) True ada
XM_043224258.1 mRNA downstream 96169 14570347 ~ 14589622 (-) False fitm2
XM_043224257.1 mRNA downstream 106226 14570347 ~ 14579565 (-) False fitm2
XM_043224313.1 mRNA upstream 10408 15195117 ~ 15197461 (-) True LOC122328567
XM_043224995.1 mRNA upstream 132018 15316727 ~ 15324022 (-) False LOC122328911
XM_043224993.1 mRNA upstream 132018 15316727 ~ 15324022 (-) True LOC122328911
XM_043224966.1 mRNA upstream 154350 15339059 ~ 15347198 (-) True LOC122328900
XM_043224960.1 mRNA upstream 162708 15347417 ~ 15474377 (-) True magi3a
TU233895 other downstream 96198 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 355007 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1403464 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1468383 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 2761141 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 162708 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 514560 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 514560 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 823397 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 959124 16143833 ~ 16169834 (-) True G158288

Expression Profile