RNA id: XM_043224983.1


Basic Information

Item Value
RNA id XM_043224983.1
length 2823
RNA type mRNA
GC content 0.39
exon number 15
gene id LOC122328902
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14684890 ~ 15301682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTCAGAGTCAGTAACGGAAGCTCCCCGCCCTCTTTCAAGTTCTACGAAACATAACGCCCTGCTCAGACGGAAATTTACTTCATGAGAGTGTTATCTCCACCCTCATCCCTTGTTTCTGACCTTTACATGCCCCATTCTGAAACGAGCACCGAACATCAAGAAACACTGAGAGcAGCGGAAGAGTAACCCGTTGGCCTCGTTTGGAGCTGTTATTCACCGAGTTAAGCAAGATGGGACGTAAGGTGCTGCGTCCCAGTGTTGCCCTTCTCGCTTTTCTTACGATCTGTCAACATGTCCGAGcGGAATGCACGCAGCCTTCTTTTGCATCACAAAATGTGCAAACGGAAGATTTTCTTTTGAGTTTCTCAGATGGATCCACTGTAACATTTGGTTGCATTCTTGGACACAAGCCACTTGACTCAAAAAGTTCTAAAACAGTTACCTGTCAGGGAACCCAGTGGACAAATCTAGAACTCAGCTGCATAAaaaaatcCTGTGGGAGCCTTGCAGATATTACCAATgggaaatatgaaatgaatggaaatttATTTGGTGATACAGCTAAAGTAGTTTGTGACAAAGGATACGTCTTAGAGAGTCAGGGATCAATAAGAACATGCAGAGCTGATGGATGGGATGGCCGAGACCCTTCCTGTGAAGtGGTGAAATGTACAGCCCCTCCATCCATAGATAATGGACGACTTAAAGATGAGCCATTGGAAAGTTATGCATATTTAGAAACAGTCTCTTATACATGTAATGGAGGACTTAATCTTATAGGACCAGCATCAATTTATTGTTCTGAGGATGGAACATTTAAACCAGATCCACCAAAATGTTTTGatgGGTGTCCAGTTCCTATAATTGCAAATTCAAAAAGAGTCAAGGGAAAGTCACCTCCGTACAAACTGGGTAACTTTGTAGAATACAGTTGTGAAAATGACTATACAATGAAAGGAGACGGTTATATTGTGTGTAGAGAAAATGGCTGGGACCCTGAAGTACCAAAGTGCATTGCGCCTTGTACTGCACCTGTTTTAAGTGACCAACTCACATTAACACCGCAATCCCTCTCAAAAACTTTCCCACATGGatccaaagtgacagtaaagtgtATTGATGGATATAAGCCAAATGGTACAACATCTCAGTCAATCACCTGTGAGGAAACCAAGTGGACAAAAGTAACCCAGACCTGCATAGCACCTTGTACTGCACCTGTTTTAAGTGACCAACTCACATTAACAAAGGAATTCCTCTCAAGTAAAACTTTCCCACATGGatccaaagtgacagtaaagtgtATTGATGGATATAAGCCAAATGGTACAACATCTCAGTCAATCACCTGTGAGGAAACCAAGTGGACAAAAGTAACCCAGACCTGCATAGCCTTACCAACAAGTCCCCCTACTACCAAGACTGTCACAACTGCTGCAATTCGTCCAACATCCAAGGCTGTACCTAAAAACAATGGCGAGAGCACTCCAGTTTATGctATAGTGATTGGTGTCATCTTTGCAGTGGGTTTGTGTATTCTCATTGTTTGCTGCTGTTTATGTAAACGCTCAAAACGGCAGTGTTCTAATAAGGCAGAAGATGTTTTATAACACCCTCACATATGTGGTCTTCAGAAAGTTGTCCTGAATAAAATCCAAATGAAGAATCCTGCAAACATATGTAccctgtatatacacacacttccCAGAATCCAGCTGCAGCAAATTTCTCCATAATCAGACTCattgttgctttaaaaatgccAGCTTCATGCGAAATAACTCCTTTTAAGCAGTCATTAACTTTTCCCCCACGTTCTTTACTCAGAAACTCGGTCTTCACATAAGTCAGGTTGAATTCACTTTTATAAAGTGTATGCTTGTGATTTCTTGACAGTTGTTGATGTAGAGATCACTCATTAATAACAACGTTCCTCTTCTTGAGAACATTTAAGGCAAGAAGTGCACTGGGAGCCCCTTCCCTCACTGATTCAGTTGAGGGCTAGATTTAGTACGATTATTTATGTAGAAAGAACATTTAAGATATGGATGTCtgaattttgtaattattgCATAATATTTGTGAATCCACGTTTTTTTTCGGTTTTGCCTGTTACTTTGCGTTTGGATAAAAGTTCCAGTAAATGTAGTACAGAAAGTGATTGGCGGTGCAGATTTTAAAGGAAAgttctgtttatttctgctgaagTGCATAAAGtgcctttttggtttttaagtGTTTGTCTGAGGTTTTGTATAGGTTCTAATtgcattagaaatgttttgcgGTCTCGATTTTTAcgttaataaagaaaaactttagTATGATAAGGATAAGTCATTTACTTTTGTCTGCTTTAAGACCAAATACATACAGAGGCCTAATTGCCTTTTGttactgcttatttattttttcccctattTGGAAAAGTTTGCTCTAAAATATTGGAAAgtattaatatcttaatatttgaatattttttttaattggtcaTAGTAATTTTCCCCAGAAGTGTTTtcttttgcgtgtgtgtgtgtgtgtgtacacgtgttctgattggctgtcttGGTTATTTAACTTTTGTTAGCTTTAAACTTTTCAGCATTCTCAAAGATGTATCATATTCTATTGTTGTGGTGTTTGAAATGGTTTTGAACCACTACATTTGTGCCATGCTAACTTGATGCACTGGCATAACTTGATTTCCAGAATAAGCACTGTCGCAAAGTTGATCAAATATAAATCAACCTTTATGATTCTGTCTTTCATTGACATGTCTGTGTGCCTGAAAGgactcaaaataaaagctatcaAAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234018 lncRNA downstream 117255 15047173 ~ 15048287 (-) False LOC122328913
TU234007 lncRNA downstream 319864 14836361 ~ 14845678 (-) True G157999
XR_006247854.1 lncRNA downstream 334693 14830264 ~ 14830849 (-) True LOC122328920
TU233965 lncRNA downstream 463430 14684890 ~ 14702112 (-) False LOC122328902
XR_006247855.1 lncRNA upstream 3003 15188148 ~ 15189638 (-) True LOC122328921
TU234028 lncRNA upstream 17221 15202366 ~ 15203950 (-) True G158014
TU233990 lncRNA upstream 25083 15210228 ~ 15338843 (-) True G157984
TU234037 lncRNA upstream 110743 15295888 ~ 15296636 (-) True G158019
TU234059 lncRNA upstream 291342 15476487 ~ 15477769 (-) True G158024
XM_043224990.1 mRNA downstream 73295 15078586 ~ 15092247 (-) True LOC122328908
XM_043224998.1 mRNA downstream 91660 15049366 ~ 15073882 (-) True LOC122328916
XM_043224996.1 mRNA downstream 117198 15047152 ~ 15048344 (-) True LOC122328913
XM_043224968.1 mRNA downstream 232536 14905836 ~ 14933006 (-) True LOC122328901
XM_043225000.1 mRNA downstream 356765 14772091 ~ 14808777 (-) True LOC122328919
XM_043224313.1 mRNA upstream 9972 15195117 ~ 15197461 (-) True LOC122328567
XM_043224995.1 mRNA upstream 131582 15316727 ~ 15324022 (-) False LOC122328911
XM_043224993.1 mRNA upstream 131582 15316727 ~ 15324022 (-) True LOC122328911
XM_043224966.1 mRNA upstream 153914 15339059 ~ 15347198 (-) True LOC122328900
XM_043224960.1 mRNA upstream 162272 15347417 ~ 15474377 (-) True magi3a
TU233895 other downstream 575949 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 834758 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 1883215 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 1948134 13141078 ~ 13217408 (-) True G157367
TU232479 other downstream 3240892 11922844 ~ 11924650 (-) True G156985
XR_006247853.1 other upstream 162272 15347417 ~ 15474377 (-) False magi3a
TU234273 other upstream 514124 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 514124 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 822961 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 958688 16143833 ~ 16169834 (-) True G158288

Expression Profile