RNA id: TU234059


Basic Information

Item Value
RNA id TU234059
length 1249
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G158024
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15476487 ~ 15477769 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCACTTCTGTCTGTTAGGGGAAGCCTCATCATCCGTTCAGGTGCCTTCCATTTCACCGGCACATTGGCTTCTTGTTCTTTGTTGACTGTTCTCGACTGACGGCTCTTGAAAGCCCAATCCAATCCAGAGACTTTCACAGAGAGCTCTGAACCAATCAACATGTTCCGGGCTGCGACATCCCCATGAATAATTCTGTGGTAGGAGTGTAAATAGtcctaaaacaaaaatcattaataaatcgTTTAAAGACTGTTTACATGTCTTATGGTTTGAGTACACAGTGGGTAAACAACTCACCAGTCCTGCTGCGACCTGTTTAGCTACAAGATAAACGGAGCTTTCTGAAAAGGTCTGGACGTTACCACTTGAGTCACATCTGTTCTGTTCAGCAAGAGTTACATTCAGTAACATTGTCATGAAAGACATTGTCTGtttcagtggttcaactgtaatgtgATGACGAGGGTGGAAAACGCTCTTTAAAGGTTATACTATAACTACAAAAGCTTATTTCTAACATgggataaaaagtaaaaagctaattttacaattaaatttttatcaCCGTAAATGTGAGAATTGTAACATATAAACGTGtatttctgataaaaaaaaaaaagttcaaaattaGTAGAAATCAGAAACGATAAACTTGAGAGTGAAAGAACGAAAGTtattgaattataattttttttaaagtataaaagtatttatctcacatttctgacttttttctctgAACTGAATACAAACTAGTACCTTTTGAAAGGATAACAGCCCAGTATCGGGTTTGTACCTCTATGAGTATACTGTAGGTGTTTTTACCTCTCGAAGACTCCAGAGAAAATGCAGGAGGTTCCCTGGAACACTTGCCTCCAAAACCAGGTACATGGGCATCCGGCGTGTCTGGCAGTATAACATCTTGACTATATTCTCATGTTTGCTCACTGCTGCATTGAAAAGGACAAAATCCAAAAATTCAGTAGCCTCCGCTCGATTTGACCCATCTGAAACGAGAACATTTATCCAACATTTATAGACTTGTTGTAAGCACCTTCTAATGAGGGATTTGTGTTCTGTACCTTTAAGAGTTTTAGCTGTCCCGTGCAGATTGGTCCATAGCGTCCCTTCTGAAGCGGCTCCACCCCCTCCAGAGTGCACTGAGCAGGTATCTCCCATGGATCCAGAGCATCCTGTGCAGGCCGCATGCTCCCAAAGCCTGTGTCCAAAGGTACAGGCTCCCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233990 lncRNA downstream 137644 15210228 ~ 15338843 (-) True G157984
TU233960 lncRNA downstream 174805 15163801 ~ 15301682 (-) False LOC122328902
TU234037 lncRNA downstream 179851 15295888 ~ 15296636 (-) True G158019
TU234028 lncRNA downstream 272537 15202366 ~ 15203950 (-) True G158014
XR_006247855.1 lncRNA downstream 286849 15188148 ~ 15189638 (-) True LOC122328921
TU234264 lncRNA upstream 126079 15603848 ~ 15607080 (-) True G158174
TU234271 lncRNA upstream 144173 15621942 ~ 15702230 (-) True LOC122329227
TU234287 lncRNA upstream 203117 15680886 ~ 15681872 (-) True G158188
XR_006247888.1 lncRNA upstream 222002 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA upstream 222002 15699771 ~ 15717244 (-) False LOC122329227
XM_043224964.1 mRNA downstream 2097 15349721 ~ 15474390 (-) False magi3a
XM_043224963.1 mRNA downstream 2100 15349721 ~ 15474387 (-) False magi3a
XM_043224960.1 mRNA downstream 2110 15347417 ~ 15474377 (-) True magi3a
XM_043224961.1 mRNA downstream 2111 15347417 ~ 15474376 (-) False magi3a
XM_043224962.1 mRNA downstream 74437 15347417 ~ 15402050 (-) False magi3a
XM_043223970.1 mRNA upstream 1271 15479040 ~ 15490268 (-) False tmem269
XM_043223969.1 mRNA upstream 1271 15479040 ~ 15490268 (-) False tmem269
XM_043223972.1 mRNA upstream 1271 15479040 ~ 15490267 (-) False tmem269
XM_043223973.1 mRNA upstream 1271 15479040 ~ 15490266 (-) False tmem269
XM_043223971.1 mRNA upstream 1271 15479040 ~ 15486540 (-) True tmem269
XR_006247853.1 other downstream 2110 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 886894 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1145703 14326966 ~ 14330784 (-) True G157909
TU233040 other downstream 2194160 13280256 ~ 13282327 (-) True G157373
TU233029 other downstream 2259079 13141078 ~ 13217408 (-) True G157367
TU234273 other upstream 221500 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other upstream 221500 15699269 ~ 15717250 (-) False LOC122329227
TU234366 other upstream 530337 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 666064 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 763041 16240810 ~ 16243395 (-) True tac3a

Expression Profile