RNA id: TU234237


Basic Information

Item Value
RNA id TU234237
length 1791
RNA type TUCP
GC content 0.37
exon number 6
gene id G158152
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15983670 ~ 16083529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGGATGTCGCTTTTCCGGTCCTCTCTCATGCCTCTCTGAATCAAGATGACCAAGAAGAGGAGGAACAACGGTCGTGCCAAGAAGGGACGTGGACATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTCCCTAAGGACAAAGCCATCAAGAAGTTTGTCATCAGAAATATTGTGGAGGCTGCAGCTGTAAGGGACATCTCCGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAACTGCACTACTGCGTCAGCTGTGCCATCCACAGTAAAGTGGTGAGAAACCGCTCTCGTGAGGCCAGGAAGGACCGGACCCCTCCGCCGCGCTTCAGGCCCACTggTGGTGCCCCAAGAGCCCCTCCAAAACCAATGTAATCTGGAGATATTTTCGTACATTATGTAAGGAAATAAAGCAGACTAAAATAAGTGCATTCTTTTTGTCTgttcatacaaaaataaaaaatgttgctcTTGTttaaaaaaaacaaaaaaccaaaaaaacagttGAATTTCAAAGAAGGGAGTTGAACAAAGTCTCCACATAGCCCATGCTACTTTGTTCCTTTCTCCCCTGACTTATGACCTCACGTTaagaataaatgcaaaatgtataaaCTGTACATAGTAGGGGTCTAAACTCTTTATCCAGCCCCTTTtacatcaaattcaaaattgTAGAGAAATAAAATTCATGAAAAAAGCAACCACTGGATATCATTTTATCAGAAAActaaatgtgtatatatctataaatatatgtaaaatggcAAACTAAGTAATATCTTTATGTATATGAACAAgagtgtttttgcatttaactttttttttttttttttttctatctgcGTTTTTCCTACAAGACCATATACAGTTTAACTAAAAAAGGTGTGATGTTTCTCTTGTCTTCACCAATGAATTTTGGAAGACTTGTTGCGGTGAATGGCAAACATTTAAGATGGGATtcatgcaaagtttttttttttttttttttttttcatggaaatagatactacttttgtttttgagagATACAGCAGTAAAATGGTGCATagcatttgtgtatttatgtaatattgttcacgtatatttcttttatttatgctACTGCTTGTGAATTACTGAACCCTGTCCTTGAATCAGTGACAGTTTAATTAGCATATACAGTTAATGGAAAATCTTGAATCTCCCAAGATGATACTGTTTTTGATTCGTGTCCTGTTGTTTTCTTCCCCTCCCCTTCCTGTAGAAGTGAATGTTTTATATGACTTATGAAAAGGCCGCGTAGTCGGAAAATGGTATGACTTCATTAATCGAAAATATCTTCATTAATTACATGTGAATTGCActcagcattattttatttatacatccTCCGAACTAGCGTTGGTTCTTTTTAAGGGTAGTCTGTTAATAAACATGGGCGCTTACTGGATTTTAGCCTGAGTAACTCTCGCCCCcctttgttcttttgaaatctCTTAATTTAAGATCTCTACTCGTATTGTAATTAAATCCTGATTTTGGTTTTCAACCTgatctactttttaaaaaaagatgctgCAACTGTACAGCAGAGCTACTTTTAGGGAAGATGATGAATaaaatggtcatttttattgtatgtggCATGTTTTGTATGGATATAATTTtgaattgtacatattttttgaCGTCAGAGGTTGCATCTCTTTATATACGGCTGTCCCTTTCCCTCCCAGCCCtccatttatttctttgtctctgctttctttcttgtaaagaaaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234182 lncRNA upstream 17906 15964752 ~ 15965764 (+) True G158117
TU234180 lncRNA upstream 34249 15896647 ~ 15949421 (+) True G158115
TU234177 lncRNA upstream 45799 15935131 ~ 15937871 (+) True G158113
TU234176 lncRNA upstream 46491 15934939 ~ 15937179 (+) False G158113
TU234169 lncRNA upstream 101778 15880663 ~ 15881892 (+) True G158110
TU234628 lncRNA downstream 456007 16539536 ~ 16539832 (+) True G158423
XR_006247787.1 lncRNA downstream 462312 16545841 ~ 16573057 (+) True LOC122328367
TU234640 lncRNA downstream 465710 16549239 ~ 16549606 (+) True G158430
TU234644 lncRNA downstream 471888 16555417 ~ 16555642 (+) True G158434
TU234650 lncRNA downstream 517177 16600706 ~ 16601288 (+) False LOC122328571
XM_043225017.1 mRNA upstream 115569 15865355 ~ 15868101 (+) True LOC122328928
XM_043225018.1 mRNA upstream 120022 15862039 ~ 15863648 (+) False LOC122328928
XM_043225227.1 mRNA upstream 247450 15733686 ~ 15736220 (+) True mipa
XM_043225319.1 mRNA upstream 254464 15724783 ~ 15729206 (+) True ptges3a
XM_043225416.1 mRNA upstream 281427 15691510 ~ 15702243 (+) True rnd1b
XM_043225026.1 mRNA downstream 46572 16130101 ~ 16188525 (+) True arhgef25a
XM_043225027.1 mRNA downstream 46573 16130102 ~ 16188525 (+) False arhgef25a
XM_043225029.1 mRNA downstream 46573 16130102 ~ 16188525 (+) False arhgef25a
XM_043225028.1 mRNA downstream 60287 16143816 ~ 16188525 (+) False arhgef25a
XM_043225553.1 mRNA downstream 130427 16213956 ~ 16222046 (+) True slc26a10
TU233395 other upstream 679120 15300704 ~ 15304550 (+) True G157620
TU233466 other upstream 987525 14992350 ~ 14996145 (+) True G157656
TU233447 other upstream 1234268 14736001 ~ 14749402 (+) False LOC122328907
TU233419 other upstream 1269137 14712147 ~ 14714533 (+) True LOC122328914
TU233368 other upstream 1298354 14683990 ~ 14685316 (+) False LOC122328906
TU234659 other downstream 537669 16621198 ~ 16664314 (+) True G158446
TU234708 other downstream 647817 16731346 ~ 16731899 (+) True G158486
TU234761 other downstream 998676 17082205 ~ 17082559 (+) False G158524
TU234762 other downstream 998676 17082205 ~ 17082655 (+) True G158524
TU234757 other downstream 1021969 17105498 ~ 17171839 (+) False G158523

Expression Profile