RNA id: TU234357


Basic Information

Item Value
RNA id TU234357
length 1011
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G158227
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15964753 ~ 15965763 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGagttaaatgtaacatttccttgttattttatgtaatggcaacagttttttttttcttcattttccaTTATGTCTATAATCACCACCAAAAATATTGGTAAATCAGTGGGCcagtgtaaatattattttaagattgtttttttttttcctaaaaatgtCACAGATTGTCACCCTGCCGAACTGTCATCATGCCATCCACATGTAATTAGAAACTTGTTTTGAGGTTTGTAGAAATTTGTTTTTGAACGTGAAATAACTGAAGACAGTTGTTGGAATATTCTggtaaaacaattatttttagacGTTGTTGTCAGATGACTCTGAAATTTAAAAGgatatttctgtaatattttgagttttttgtacatttatttgatttgtcaTCGTCTTCACATCTTTTTCTAATGTTGCTACttacattcatattttactAAACATCTGTGCCTTCAGTGAAGTCCCAAACGTAGCAACCTCTTATTGAAACTGTGCGTCTCTGCACATCTTTTGATACTAGATACTTTAGTTTAATGGCAACACTTGTCTGCCGAGGACAGCTATTCAGGATTTCTGGaaattgacagtaaaaacaGGAATGATGTGAAGCAGGATGTGCAACAAAGAAAGTGTTCAAAAACCTCAAAATATCCAAGATCTGacttttaaatatgttcttattaaaacttacattttactTAAGTTATTCTCTTCTTTATCACCTGAAGTTAATTGTGTGCATTTTAGGACTTATTTATCTTTTAACCATTTTCTTGTCTGTTAATGTTGATCACACAGTTCCTCTCAGGGTTTATTTTGTATCTAATATCATTTTGATAGAATCGTTTAAAAAGAGCAACAGTAGTGTTAGGAGTTCACATTCAggatcacttaaaaaaaacaaaaaaaacaagtaaaatctGAACCCagttaatatttaagaattgGACGTTGTCTTTTGCTATTGTCACCACCTTTGGTTTTTGAAACGGCTTGAGCAGATTTTTCCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234328 lncRNA downstream 151826 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 175422 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 247509 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 247509 15699771 ~ 15717244 (-) False LOC122329227
TU234271 lncRNA downstream 262523 15621942 ~ 15702230 (-) True LOC122329227
TU234368 lncRNA upstream 42343 16008106 ~ 16008915 (-) False G158231
TU234426 lncRNA upstream 135862 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 152118 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 281253 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 389606 16355369 ~ 16358705 (-) True G158336
XM_043224058.1 mRNA downstream 334 15957896 ~ 15964419 (-) True LOC122328386
XM_043224059.1 mRNA downstream 349 15957896 ~ 15964404 (-) False LOC122328386
XM_043224061.1 mRNA downstream 364 15957896 ~ 15964389 (-) False LOC122328386
XM_043224060.1 mRNA downstream 365 15957896 ~ 15964388 (-) False LOC122328386
XM_043225558.1 mRNA downstream 7355 15949082 ~ 15957398 (-) False pfkma
XM_043224950.1 mRNA upstream 658 15966421 ~ 15975709 (-) False phf8
XM_043224948.1 mRNA upstream 658 15966421 ~ 15975709 (-) False phf8
XM_043224949.1 mRNA upstream 658 15966421 ~ 15975709 (-) True phf8
XM_043224109.1 mRNA upstream 12853 15978616 ~ 15983169 (-) True arf3a
XM_043224108.1 mRNA upstream 12853 15978616 ~ 15982975 (-) False arf3a
TU234273 other downstream 247503 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 247503 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 490376 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1375160 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1633969 14326966 ~ 14330784 (-) True G157909
TU234366 other upstream 42343 16008106 ~ 16008915 (-) True G158231
TU234433 other upstream 178070 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 275047 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 391889 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1210889 17176652 ~ 17179779 (-) False slc48a1a

Expression Profile