RNA id: TU234368


Basic Information

Item Value
RNA id TU234368
length 578
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G158231
representative False

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16008106 ~ 16008915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtatttgttttaagccATTTTGCCttatattcacaatttaaaaaaaaaaattactagtTCATATGACTGGAAAATTAAgcagtttgatttttttttttttttttctcagaacaCTACCAAACTTCAGGTACACAAgagcaacattttttatttttgtatgaacAGACAAAAAGAATGCACTTATTTTAGTCTGCTTTATTTCCTTACATAATGTACGAAAATATCTCCAGATTACATTGGTTTTGGAGGGGCTCTTGGGGCACCAcAGTGGGCCTGAAGCGCGGCGGAGGGGTCCGGTCCTTCCTGGCCTCACGAGAGCGGTTTCTCACCACTTTACTGTGGATGGCACAGCTGACGCAGTAGTGCAGTTTCACATACAGTTTGGGCAAAACGTAGAGTCAAACACACTGGCTTCGGAGATGTCCCTTACAGCTGCAGCCTCCACAATATTTCTGATGACAAACTTCTTGATGGCTTTGTCCTTAGGGACACACCGGGCACAGTTTGTGCAGCGGATGGGCTGGACATGTCCACGTCCCTTCTTGGCACGACCGTTGTTCCTCCTCTTCTTGGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234357 lncRNA downstream 42343 15964753 ~ 15965763 (-) True G158227
TU234328 lncRNA downstream 195179 15812281 ~ 15812927 (-) True G158208
TU234308 lncRNA downstream 218775 15728154 ~ 15789331 (-) True G158198
XR_006247888.1 lncRNA downstream 290862 15699771 ~ 15717244 (-) False LOC122329227
XR_006247887.1 lncRNA downstream 290862 15699771 ~ 15717244 (-) False LOC122329227
TU234426 lncRNA upstream 92710 16101625 ~ 16102214 (-) True G158282
TU234428 lncRNA upstream 108966 16117881 ~ 16118214 (-) True G158284
TU234492 lncRNA upstream 238101 16247016 ~ 16247293 (-) True G158333
TU234496 lncRNA upstream 346454 16355369 ~ 16358705 (-) True G158336
TU234531 lncRNA upstream 408010 16416925 ~ 16439280 (-) True G158353
XM_043224196.1 mRNA downstream 16541 15984905 ~ 15991565 (-) True wnt10b
XM_043224109.1 mRNA downstream 24937 15978616 ~ 15983169 (-) True arf3a
XM_043224108.1 mRNA downstream 25131 15978616 ~ 15982975 (-) False arf3a
XM_043224950.1 mRNA downstream 32397 15966421 ~ 15975709 (-) False phf8
XM_043224948.1 mRNA downstream 32397 15966421 ~ 15975709 (-) False phf8
XM_043225433.1 mRNA upstream 805 16009720 ~ 16019647 (-) False ikzf4
XM_043225432.1 mRNA upstream 805 16009720 ~ 16019647 (-) False ikzf4
XM_043225429.1 mRNA upstream 805 16009720 ~ 16019647 (-) False ikzf4
XM_043225430.1 mRNA upstream 805 16009720 ~ 16019429 (-) False ikzf4
XM_043225431.1 mRNA upstream 805 16009720 ~ 16018103 (-) True ikzf4
TU234273 other downstream 290856 15699269 ~ 15717250 (-) False LOC122329227
TU234274 other downstream 290856 15699269 ~ 15717250 (-) False LOC122329227
XR_006247853.1 other downstream 533729 15347417 ~ 15474377 (-) False magi3a
TU233895 other downstream 1418513 14581094 ~ 14589593 (-) True fitm2
TU233846 other downstream 1677322 14326966 ~ 14330784 (-) True G157909
TU234433 other upstream 134918 16143833 ~ 16169834 (-) True G158288
TU234490 other upstream 231895 16240810 ~ 16243395 (-) True tac3a
TU234495 other upstream 348737 16357652 ~ 16358705 (-) False G158336
TU234864 other upstream 1167737 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 1330352 17339267 ~ 17343385 (-) True G158609

Expression Profile