RNA id: TU234531


Basic Information

Item Value
RNA id TU234531
length 945
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G158353
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16416925 ~ 16439280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAACTCAGGATGAAGAATAGAGCTTTTAATACTTGGACCCCACAGCATGTGTCAAGTTAGTTTCCATGGACCTCCATCAGTATATTTCTTAacatataaatgatatttgcTCCTGTTAGTGCAAATGTGTAAGGCATACATTGAAACAACTCTAGAGGACACAGTGGgctcattttatgcatttatttatgtagcaATTTACGTTCTGATTAGCTGCTGAGAGGCTGCATCAGCAGTTGGGTAATAACCGCATGTGTCTGAGCACCGGCGGTTCAACGTCTCAGTCCTTCACTTCTCAAATCTGTGTTCCTCTCCAAAAATACCACAAAAGTTGCCTAAAAATGTCCCCGTTCTGAAAATCCCTGCACGTCTGCAATTTCACCAAAACCTCACTCCATGTTCTCGCCCTCCCGCCCTTGTCCATGACTTCCCCTCCCCCAAATTAAAGTTCCCATTTGCAAAGCTAGTGAGGTCACACATTAGCAACAGAGGacaatcaactttttttttccctgcaagAGGGTTACAACCATCCTCTTTACACACAAAACAGCCCTCTCCTTTTTTTAACAGCGagagaagaacaaaaaagattaaacataataaactcCCAAACCTTTTGTACAGAGAAACCAAACTagagaaaatgtcttttatattaGTCCGCAGATATCCTCTGTGATCCTCTCTCGGGCTCTGTAATTTTAATAGGGaagtgagacacacacatataccaAATACAGTTCGGTGTGTCAATGAGAGGCTCTGTGTGTAGTAGGCAATGTCAATACATCTCTGTCACTCGTTTAGCCAtccatctgtttgttttatgtggATTAGAAGTAGGTCTTGGCCGTATGTATGATAGTGTGAATATGCATGTGTGTCATAAGTTAACAACATGTAAGTCTACATATCTCTGTGTGtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234496 lncRNA downstream 58220 16355369 ~ 16358705 (-) True G158336
TU234492 lncRNA downstream 169632 16247016 ~ 16247293 (-) True G158333
TU234428 lncRNA downstream 298711 16117881 ~ 16118214 (-) True G158284
TU234426 lncRNA downstream 314711 16101625 ~ 16102214 (-) True G158282
TU234368 lncRNA downstream 408010 16008106 ~ 16008915 (-) False G158231
TU234575 lncRNA upstream 4526 16443806 ~ 16444037 (-) True G158388
TU234605 lncRNA upstream 59089 16498369 ~ 16500850 (-) True G158404
TU234622 lncRNA upstream 90772 16530052 ~ 16531096 (-) True G158417
TU234642 lncRNA upstream 113763 16553043 ~ 16553395 (-) True G158432
TU234682 lncRNA upstream 168181 16607461 ~ 16607960 (-) True G158462
XM_043225230.1 mRNA downstream 15220 16399805 ~ 16401705 (-) False tmem107l
XM_043225229.1 mRNA downstream 15220 16399805 ~ 16401705 (-) False tmem107l
XM_043225228.1 mRNA downstream 15220 16399805 ~ 16401705 (-) True tmem107l
XM_043225231.1 mRNA downstream 15228 16399805 ~ 16401697 (-) False tmem107l
XM_043224641.1 mRNA downstream 40117 16359689 ~ 16376808 (-) True c1ql4a
XM_043224307.1 mRNA upstream 48946 16488226 ~ 16505803 (-) False ribc1
XM_043224308.1 mRNA upstream 48946 16488226 ~ 16494459 (-) True ribc1
XM_043224027.1 mRNA upstream 102234 16541514 ~ 16545688 (-) True LOC122328366
XM_043224317.1 mRNA upstream 170198 16609478 ~ 16616339 (-) True LOC122328572
XM_043225250.1 mRNA upstream 234957 16674237 ~ 16677367 (-) True LOC122329052
TU234495 other downstream 58220 16357652 ~ 16358705 (-) False G158336
TU234490 other downstream 173530 16240810 ~ 16243395 (-) True tac3a
TU234433 other downstream 247091 16143833 ~ 16169834 (-) True G158288
TU234366 other downstream 408010 16008106 ~ 16008915 (-) True G158231
TU234273 other downstream 699675 15699269 ~ 15717250 (-) False LOC122329227
TU234864 other upstream 737372 17176652 ~ 17179779 (-) False slc48a1a
TU234899 other upstream 899987 17339267 ~ 17343385 (-) True G158609
TU235255 other upstream 1606658 18045938 ~ 18047878 (-) False march9
XR_006247822.1 other upstream 1792363 18231643 ~ 18235536 (-) False hnrnpa1b
TU235534 other upstream 2308111 18747391 ~ 18754712 (-) True G159076

Expression Profile